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freebsd-ports/biology
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Patrick Li 9480dee06a - Update to 1.0.0 
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}

PR:		ports/82154
Submitted by:	George Hartzell <hartzell@alerce.com>
Approved by:	maintainer
2005-06-13 04:31:34 +00:00
..
ariadne Add ariadne 1.3, programs to compare protein sequences and 2004-06-22 14:29:59 +00:00
artemis - Add 'java' category 2005-03-20 14:43:55 +00:00
avida At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
babel - Remove obsolete MASTER_SITES 2004-06-08 08:19:40 +00:00
biojava - Update biology/biojava to 1.30 2004-11-22 15:47:58 +00:00
blast From the PR: 2005-03-18 13:01:07 +00:00
chemeq SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
clustalw - Add an end-of-string to each line of the input 2003-08-28 04:51:02 +00:00
coalesce Fix unfetchable tarball, it was renamed and relocated on original 2005-02-18 12:58:07 +00:00
crimap SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
deft At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
distribfold Drop maintainership 2004-06-24 14:28:12 +00:00
dna-qc BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
embassy - Update to 2.10.0 2005-05-29 18:26:25 +00:00
emboss - Update to 2.10.0 2005-05-29 18:26:05 +00:00
fasta With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
fasta3 Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 2004-07-01 03:02:23 +00:00
fastdnaml Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
finchtv Add finchtv 1.3.0, a chromatogram trace viewer. 2005-03-11 21:16:16 +00:00
flip SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
fluctuate Readd mistakenly removed patch to honour CC/CFLAGS. 2005-02-18 13:41:09 +00:00
garlic At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
genpak Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
gff2ps [PATCH] biology/gff2ps distsite fix 2004-06-01 02:23:41 +00:00
gperiodic Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
grappa - update grappa to 2.0 2005-04-15 18:48:57 +00:00
hmmer - Remove a junk white space. 2004-11-25 22:58:29 +00:00
kinemage SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
L-Breeder Finish repo copy of wxgtk 2.4.2 ports to wxgtk24* 2005-05-12 16:39:59 +00:00
lamarc With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
libgenome change the libtool version to use from 1.3 to 1.5 2005-05-31 16:41:49 +00:00
lsysexp Bump PORTREVISION to chase the glib20 shared lib version change. 2005-03-12 10:54:27 +00:00
migrate At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
molden o update to 4.3 2005-01-20 03:44:55 +00:00
mopac At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
nab - Fix the packing list [1] 2005-04-29 22:14:29 +00:00
ncbi-toolkit - Fix man page damage I did last night 2005-03-20 11:47:59 +00:00
nclever BROKEN: Unfetchable 2005-03-26 21:59:50 +00:00
ortep3 - Update MASTER_SITES 2004-06-02 03:32:57 +00:00
p5-AcePerl - Change maintainer's email address. 2005-04-11 20:34:36 +00:00
p5-bioperl - add missing MAN1 and MAN3 2004-09-03 17:04:38 +00:00
paml Update to 3.14 2004-11-06 03:55:37 +00:00
phylip Bump PORTEPOCH. 3.6 < 3.62 2005-04-22 12:08:12 +00:00
platon At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
povchem After patching, remove the carriage-return characters from povchem.c 2004-04-07 15:39:34 +00:00
primer3 - Update to 1.0.0 2005-06-13 04:31:34 +00:00
psi88 - Fix MASTER_SITES 2004-05-23 07:36:35 +00:00
py-biopython Fix build on Python 2.4 2004-12-02 05:51:25 +00:00
pymol Try to unbreak on amd64 and ia64 2005-03-26 22:20:19 +00:00
rasmol Update to version 2.7.2.1.1 2004-07-09 18:01:11 +00:00
recombine With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
ruby-bio Update to 0.6.2. 2004-12-25 17:52:46 +00:00
seaview - Update to 2004.12.16 2004-12-18 15:14:42 +00:00
seqio SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
sim4 - Update to version 2003.09.21 2004-03-12 13:53:23 +00:00
t_coffee - Update to 2.03 2004-11-25 23:03:54 +00:00
tinker Upgrade to latest revision to make fetchable again. 2004-09-25 08:06:08 +00:00
treepuzzle At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
treeviewx Finish repo copy of wxgtk 2.4.2 ports to wxgtk24* 2005-05-12 16:39:59 +00:00
tRNAscan-SE SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
wise SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
xdrawchem At Kris's request, back out the MACHINE_ARCH spelling correction until 2005-04-12 03:26:56 +00:00
xmolwt SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Makefile - biology/act is redundant after biology/artemis update 2005-03-12 08:07:23 +00:00