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41 lines
1.1 KiB
Makefile
41 lines
1.1 KiB
Makefile
# Created by: Tony Maher
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# $FreeBSD$
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PORTNAME= mummer
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PORTVERSION= 3.23
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PORTREVISION= 1
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CATEGORIES= biology
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MASTER_SITES= SF
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DISTNAME= MUMmer${PORTVERSION}
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Modular system for rapid whole genome alignment
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USES= gmake perl5
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PROGRAMS= annotate combineMUMs delta-filter gaps \
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mgaps mummer repeat-match show-aligns \
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show-coords show-diff show-snps show-tiling
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SCRIPTS= dnadiff exact-tandems mapview mummerplot nucmer \
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nucmer2xfig promer run-mummer1 run-mummer3
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DOCUMENTS= COPYRIGHT INSTALL LICENSE README
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OPTIONS_DEFINE= DOCS
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.include <bsd.port.options.mk>
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post-extract:
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@${REINPLACE_CMD} -e 's,type perl,type ${LOCALBASE}/bin/perl,' ${WRKSRC}/scripts/Makefile
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.if (${OSVERSION} >= 1000024)
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@${REINPLACE_CMD} -e 's,type gcc,type clang,' ${WRKSRC}/Makefile
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@${REINPLACE_CMD} -e 's,type g++,type clang++,' ${WRKSRC}/Makefile
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.endif
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do-install:
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${INSTALL_PROGRAM} ${PROGRAMS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${SCRIPTS:S|^|${WRKSRC}/|} ${STAGEDIR}${PREFIX}/bin
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${DOCUMENTS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
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.include <bsd.port.mk>
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