mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-26 05:02:18 +00:00
60 lines
1.5 KiB
Makefile
60 lines
1.5 KiB
Makefile
# Created by: Mauricio Herrera Cuadra <mauricio@arareko.net>
|
|
# $FreeBSD$
|
|
|
|
PORTNAME= bioperl-run
|
|
PORTVERSION= 1.6.901
|
|
CATEGORIES= biology perl5
|
|
PKGNAMEPREFIX= p5-
|
|
|
|
MAINTAINER= ports@FreeBSD.org
|
|
COMMENT= Wrapper modules for common bioinformatics tools
|
|
|
|
LICENSE= ART10 GPLv3
|
|
LICENSE_COMB= dual
|
|
|
|
BUILD_DEPENDS= p5-bioperl>=1.6.0:${PORTSDIR}/biology/p5-bioperl \
|
|
p5-IPC-Run>=0:${PORTSDIR}/devel/p5-IPC-Run \
|
|
p5-Algorithm-Diff>=0:${PORTSDIR}/devel/p5-Algorithm-Diff \
|
|
p5-XML-Twig>=0:${PORTSDIR}/textproc/p5-XML-Twig \
|
|
p5-File-Sort>=0:${PORTSDIR}/misc/p5-File-Sort \
|
|
p5-Config-Any>=0:${PORTSDIR}/devel/p5-Config-Any
|
|
|
|
RUN_DEPENDS:= ${BUILD_DEPENDS}
|
|
|
|
CONFLICTS= p5-bioperl-run-1.[13579]*
|
|
|
|
USES= perl5
|
|
USE_GITHUB= yes
|
|
GH_ACCOUNT= bioperl
|
|
GH_COMMIT= 96ccd93
|
|
GH_TAGNAME= ${GH_COMMIT}
|
|
|
|
USES= perl5 shebangfix
|
|
USE_PERL5= modbuild
|
|
SHEBANG_FILES= scripts/bioperl_application_installer.PLS \
|
|
scripts/multi_hmmsearch.PLS \
|
|
scripts/panalysis.PLS \
|
|
scripts/papplmaker.PLS \
|
|
scripts/run_neighbor.PLS \
|
|
scripts/run_protdist.PLS \
|
|
|
|
OPTIONS_DEFINE= DOCS
|
|
|
|
.include <bsd.port.options.mk>
|
|
|
|
post-build:
|
|
cd ${WRKSRC} && ${PERL} ./Build manifest
|
|
|
|
post-install:
|
|
.for i in bioperl_application_installer multi_hmmsearch panalysis papplmaker run_neighbor run_protdist
|
|
${CP} ${WRKSRC}/scripts/${i}.PLS ${STAGEDIR}${PREFIX}/bin/bp_${i}
|
|
.endfor
|
|
.if ${PORT_OPTIONS:MDOCS}
|
|
${MKDIR} ${STAGEDIR}${DOCSDIR}
|
|
.for doc in AUTHORS Changes INSTALL.PROGRAMS README
|
|
${INSTALL_DATA} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
|
|
.endfor
|
|
.endif
|
|
|
|
.include <bsd.port.mk>
|