Tijl Coosemans 7f997ad80c - USES=fortran. ...

- Fix detection of dlopen(3) to support plugins from science/vmd.

2013-12-27 16:39:52 +00:00

..

2d-rewriter

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

2dhf

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

abinit

science/abinit: depends explicitly on "python"

2013-12-15 12:49:28 +00:00

afni

Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;

2013-11-13 08:19:34 +00:00

avogadro

- Update from 1.1.0 to 1.1.1

2013-12-18 23:33:20 +00:00

bddsolve

Convert LIB_DEPENDS for ports depending on boost

2013-12-12 14:15:03 +00:00

bft

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

bodr

- Update to version 10

2013-11-02 17:34:59 +00:00

brian

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

buddy

Reset maintainer for llwang@infor.org

2013-12-18 10:38:33 +00:00

cdcl

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

cdf

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

cdo

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

cgnslib

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

checkmol

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

chemical-mime-data

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

chemtool

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

chemtool-devel

science/chemtool-devel: Unbreak on FreeBSD 10+

2013-12-25 22:08:13 +00:00

clhep

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

colt

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

crf++

- Remove NO_STAGE as these have been tested to be safe

2013-09-25 00:54:08 +00:00

dcl

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

devisor

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

dlpoly-classic

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

dtiquery

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

ecs

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

elmer-eio

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

elmer-hutiter

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

elmer-matc

science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate

2013-12-26 02:47:52 +00:00

elmer-meshgen2d

- Remove NO_STAGE as these have been tested to be safe

2013-09-25 00:54:08 +00:00

elmergrid

- Remove NO_STAGE as these have been tested to be safe

2013-09-25 00:54:08 +00:00

elmerpost

science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate

2013-12-26 02:47:52 +00:00

epte

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

euler

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

fastcap

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

fasthenry

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

felt

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

fisicalab

Added FisicaLab port.

2013-10-08 19:31:32 +00:00

flounder

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

fvcom

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

fvcom-mpi

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

fvm

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

g3data

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

gamess

uncomment MANUAL_PACKAGE_BUILD.

2013-11-29 01:45:50 +00:00

gchemutils

Add patch to unbreak with libc++ 10.0+.

2013-12-03 22:10:25 +00:00

gdis

Explicitly link libraries on 10 unmaintained ports

2013-10-07 23:40:23 +00:00

getdp

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

ghemical

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

ghmm

- Remove NO_STAGE as these have been tested to be safe

2013-09-25 00:54:08 +00:00

gnudatalanguage

- Upgrade to 1.3.18.

2013-11-30 15:08:05 +00:00

gramps

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

gromacs

- USES=fortran.

2013-12-27 16:39:52 +00:00

gsmc

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

gtamsanalyzer

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

gwyddion

- Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR)

2013-11-20 14:25:28 +00:00

h5utils

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

harminv

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

hdf

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

hdf5

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

hdf5-18

- Fix PKGNAME collision

2013-12-11 18:38:53 +00:00

hdf-java

- Convert to dos2unix.mk

2013-11-19 23:08:44 +00:00

hs-bio

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

InsightToolkit

Now when it builds on 10.x, drop maintainership

2013-12-21 00:28:51 +00:00

isaac-cfd

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

jmol

- Update to version 13.2.3 [1]

2013-11-07 16:53:33 +00:00

jstrack

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

kalzium

- Update from 1.1.0 to 1.1.1

2013-12-18 23:33:20 +00:00

kst2

Add patches to fix build on 10 and head

2013-12-09 15:08:42 +00:00

lamprop

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

libctl

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

libghemical

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

libint

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

libkml

- Update LICENSE

2013-12-26 21:48:54 +00:00

liblinear

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

liboglappth

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

libquantum

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

libsvm

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

libsvm-python

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

linsmith

- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st])

2013-10-22 14:01:38 +00:00

massxpert

- Remove manual creation and removal of share/applications, as it's now in the mtree (categories starting with [st])

2013-10-22 14:01:38 +00:00

mbdyn

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

mcstas

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

medit

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

meep

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

mei

- Upgrade to 1.0.4;

2013-11-26 21:30:22 +00:00

minc

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

minc2

Mark as broken: does not build with newer hdf5 version:

2013-12-06 11:44:48 +00:00

mol2ps

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

mpb

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

mpqc

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

mpqc-mpich

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

ncs

science/ncs: fix 'python' usage to remove implicity dependency of lang/python

2013-12-17 21:55:48 +00:00

netcdf

- Fix PKGNAME collision

2013-11-06 17:34:52 +00:00

netcdf3-ftn

- Fix PKGNAME collision

2013-11-06 17:35:50 +00:00

netcdf4

- Use CONFLICTS_INSTALL instead of CONFLICTS

2013-12-10 19:17:08 +00:00

netcdf-ftn

- Remove LATEST_LINK

2013-12-10 19:18:39 +00:00

nifticlib

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

openbabel

Add upstream patch to fix the build with libc++.

2013-11-13 15:49:25 +00:00

p5-Algorithm-SVMLight

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-3DBuilder

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Bond-Find

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Canonicalize

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Elements

Support STAGEDIR.

2013-11-06 01:32:11 +00:00

p5-Chemistry-File-MDLMol

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-Mopac

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-PDB

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-SLN

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-SMARTS

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-SMILES

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-VRML

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-File-XYZ

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-FormulaPattern

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-InternalCoords

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Isotope

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-MacroMol

Support STAGEDIR.

2013-11-06 01:32:11 +00:00

p5-Chemistry-MidasPattern

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Mok

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Mol

Support STAGEDIR.

2013-11-06 01:32:11 +00:00

p5-Chemistry-Pattern

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Reaction

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Chemistry-Ring

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Geo-BUFR

Support STAGEDIR.

2013-11-06 01:32:11 +00:00

p5-Geo-Coordinates-Converter

Support STAGEDIR.

2013-11-06 01:32:11 +00:00

p5-Geo-Coordinates-Converter-iArea

- Support STAGEDIR

2013-09-30 20:59:03 +00:00

p5-Geo-ReadGRIB

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Geo-WebService-Elevation-USGS

Support STAGEDIR.

2013-11-06 01:32:11 +00:00

p5-PerlMol

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

p5-Physics-Unit

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

paje

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

paraview

Update freetype to 2.5.2.

2013-12-24 21:22:21 +00:00

peekabot

Convert LIB_DEPENDS for ports depending on boost

2013-12-12 14:15:03 +00:00

pnetcdf

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

psi3

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

psychopy

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

py-coards

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

py-DendroPy

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

py-h5py

science/py-h5py: update to 2.2.1

2013-12-13 19:59:42 +00:00

py-hcluster

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

py-mdp

Reset maintainer for llwang@infor.org

2013-12-18 10:38:33 +00:00

py-mlpy

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

py-netCDF4

- Convert to dos2unix.mk

2013-11-19 23:08:44 +00:00

py-obspy

- Fix build with distribute -> setuptools change

2013-11-27 19:21:00 +00:00

py-paida

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

py-pupynere

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

py-pyaixi

science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm

2013-12-08 14:12:47 +00:00

py-pydap

science/py-pydap: update to 3.1.1

2013-11-29 11:40:24 +00:00

py-pydicom

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

py-scikit-learn

Use PYDISTUTILS_AUTOPLIST.

2013-11-05 12:37:28 +00:00

py-scimath

- Update WWW:

2013-11-20 20:51:25 +00:00

py-scipy

- Fix distinfo

2013-11-18 15:36:42 +00:00

py-ws2300

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

pybrain

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

pycdf

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

pynn

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

pyteomics

Update to 2.2.1

2013-11-29 11:57:18 +00:00

pyteomics.biolccc

- Update WWW:

2013-11-20 20:51:25 +00:00

qcl

- Update to version 0.6.3

2013-10-30 17:57:33 +00:00

qtresistors

- Convert to USES=qmake (and other USES while I'm here)

2013-11-22 12:55:00 +00:00

R-cran-AMORE

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-bayesm

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-DCluster

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-e1071

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-eco

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-Epi

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-epicalc

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-snow

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

R-cran-som

Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*).

2013-11-27 18:56:43 +00:00

ruby-dcl

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

ruby-gphys

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

ruby-netcdf

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

rubygem-ai4r

- Add stage support

2013-10-30 02:56:33 +00:00

silo

- Update from 4.9 to 4.9.1

2013-12-18 23:27:40 +00:00

simlib

- Update to 3.02

2013-09-21 11:02:36 +00:00

step

Add my upstream commit that fixes the build with libc++.

2013-11-03 22:48:12 +00:00

svmlight

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

szip

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

udunits

- Strip shared library

2013-10-10 14:32:08 +00:00

v_sim

Update to libmpc version 1.0.1 which brings the following fixes:

2013-10-26 00:52:33 +00:00

veusz

- Update to 1.19.1

2013-12-22 14:33:44 +00:00

vmd

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

voro++

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

x11iraf

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

xfce4-equake-plugin

- Update MASTER_SITES macro, xfce4-equake-plugin is now hosted on

2013-10-31 17:11:01 +00:00

xmakemol

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

xmds

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

2013-09-20 22:48:30 +00:00

Makefile

science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm

2013-12-08 14:12:47 +00:00