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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-22 04:17:44 +00:00
freebsd-ports/biology
Edwin Groothuis e713c30f0c biology/linux-foldingathome needs to run as root?
(also: update to 5.0.4)

	Upon installing FoldingAtHome I ran the software from a
	user account only to find that I was stuck in a loop of
	trying to enter configuration options. Shortly thereafter
	I realized that it was trying to write to
	/usr/local/share/foldingathome, and therefore requires being
	run as root to write there unless one changes permissions
	there. Seing as this isn't installed with a startup script
	for daemonization, and running as root seems a little
	excessive for this application, should this be adapted to
	run from a user account or set up to be able to start at
	boot?

And from maintainer:

	This diff updates the port to version 5.04, and adds
	support to running as normal user using ~/.fah
	directory.

PR:		ports/113335
Submitted by:	James Snyder <jbsnyder@fanplastic.org>
Approved by:	maintainer
2007-09-23 05:45:41 +00:00
..
adun - cleanup after gnustep-make-2.0.1 2007-07-22 20:50:58 +00:00
ariadne
artemis - Update to version 9 2007-07-08 11:47:58 +00:00
avida
babel
belvu
biococoa
biojava
blast
blat
boinc-simap - Runs on 7.0-CURRENT with compat6x 2007-07-08 11:56:59 +00:00
chemeq
clustalw
crimap - Fix the build with GCC 4.2 2007-06-18 21:35:50 +00:00
distribfold
dna-qc
dotter Replace IGNORE with ONLY_FOR_ARCHS for this binary port. 2007-08-09 01:00:45 +00:00
embassy
emboss
fasta
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic Fix pkg-plist 2007-08-02 20:25:01 +00:00
grappa
hmmer
jalview
kinemage
L-Breeder dyeske at yahoo dot com -> dyeske at gmail dot com 2007-07-05 23:39:06 +00:00
lagan
lamarc
libgenome
linux-foldingathome biology/linux-foldingathome needs to run as root? 2007-09-23 05:45:41 +00:00
lsysexp dyeske at yahoo dot com -> dyeske at gmail dot com 2007-07-05 23:39:06 +00:00
mafft
migrate - Update to version 2.3 2007-09-03 09:24:30 +00:00
molden Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:33:38 +00:00
mopac
nab
ncbi-toolkit
ortep3 Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-14 09:51:49 +00:00
p5-AcePerl Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-Bio-ASN1-EntrezGene Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-Bio-Das - Update to 1.06 2007-09-07 14:45:12 +00:00
p5-Bio-Phylo Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-run Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
p5-bioperl-run-devel Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+. 2007-09-08 01:12:10 +00:00
paml
phylip
platon Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:41:22 +00:00
povchem
primer3
protomol
psi88 Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:41:22 +00:00
py-biopython - Fix typos. 2007-05-31 03:49:14 +00:00
pymol - Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmw 2007-09-02 07:16:05 +00:00
rasmol
recombine
ruby-bio
seaview
seqio
sim4
t_coffee
tinker Now we use USE_FORTRAN=yes to use FORTRAN compiler. 2007-07-12 06:49:37 +00:00
treepuzzle
treeviewx
tRNAscan-SE
wise
xdrawchem
xmolwt
Makefile