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81ba48cd37
freebsd-ports/biology
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Renato Botelho 81ba48cd37 Add mafft 5.734, multiple sequence alignments based on fast Fourier 
transform.

PR:		ports/93059
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
2006-03-15 10:41:16 +00:00
..
ariadne SHA256ify 2006-01-22 08:34:46 +00:00
artemis - Fix fetch problems 2005-12-05 16:57:26 +00:00
avida - Add SHA256 2005-11-24 00:04:00 +00:00
babel - Add SHA256 2005-11-24 00:04:00 +00:00
belvu Add belvu 2.29, a viewer for multiple sequence alignments. 2006-03-15 10:24:57 +00:00
biojava SHA256ify 2006-01-22 08:34:46 +00:00
blast - Update to 2.0.20060101 2006-01-14 19:36:19 +00:00
blat Add blat 33, a fast tool for local sequence similarity searches. 2006-03-15 10:26:12 +00:00
chemeq - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid 2006-01-19 19:47:59 +00:00
clustalw SHA256ify 2006-01-22 08:34:46 +00:00
coalesce - Add SHA256 2005-11-24 00:04:00 +00:00
crimap SHA256ify 2006-01-22 08:34:46 +00:00
distribfold Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry 2006-01-22 00:17:42 +00:00
dna-qc SHA256ify (manually done and checked) 2006-01-22 09:54:26 +00:00
dotter Add dotter 20021204 # last modified date in FTP server, a viewer for 2006-03-15 10:35:24 +00:00
embassy Add missing USE_ICONV 2006-01-26 04:11:16 +00:00
emboss Conversion to a single libtool environment. 2006-02-23 10:40:44 +00:00
fasta - Add SHA256 2005-11-24 00:04:00 +00:00
fasta3 Update to 34.t25.d4. 2006-02-10 09:37:02 +00:00
fastdnaml - Add SHA256 2005-11-24 00:04:00 +00:00
finchtv SHA256ify 2006-01-22 08:34:46 +00:00
fluctuate - Add SHA256 2005-11-24 00:04:00 +00:00
garlic Update to 1.5 2006-03-15 08:10:49 +00:00
genpak - Add SHA256 2005-11-24 00:04:00 +00:00
gff2ps SHA256ify 2006-01-22 08:34:46 +00:00
gperiodic - Add SHA256 2005-11-24 00:04:00 +00:00
grappa SHA256ify 2006-01-22 08:34:46 +00:00
hmmer SHA256ify 2006-01-22 08:34:46 +00:00
jalview Jalview is a multiple alignment editor written in Java. It is used widely in a 2006-02-13 09:42:13 +00:00
kinemage SHA256ify 2006-01-22 08:34:46 +00:00
L-Breeder - Update graphics/libglut to 6.4.1. 2006-01-12 12:54:32 +00:00
lamarc With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
libgenome Conversion to a single libtool environment. 2006-02-23 10:40:44 +00:00
lsysexp SHA256ify 2006-01-22 08:34:46 +00:00
mafft Add mafft 5.734, multiple sequence alignments based on fast Fourier 2006-03-15 10:41:16 +00:00
migrate - Add SHA256 2005-11-24 00:04:00 +00:00
molden - Update graphics/libglut to 6.4.1. 2006-01-12 12:54:32 +00:00
mopac SHA256ify (manually done and checked) 2006-01-22 09:54:26 +00:00
nab SHA256ify 2006-01-22 08:34:46 +00:00
ncbi-toolkit Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry 2006-01-22 01:29:46 +00:00
ortep3 SHA256ify 2006-01-22 08:34:46 +00:00
p5-AcePerl SHA256ify 2006-01-22 08:34:46 +00:00
p5-Bio-ASN1-EntrezGene SHA256ify 2006-01-22 08:34:46 +00:00
p5-Bio-Das SHA256ify 2006-01-22 08:34:46 +00:00
p5-bioperl SHA256ify 2006-01-22 08:34:46 +00:00
p5-bioperl-devel Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry 2006-01-22 01:29:46 +00:00
paml Update to 3.14b 2005-11-10 01:21:42 +00:00
phylip Put PORTEPOCH back. 2006-02-09 01:17:59 +00:00
platon SHA256ify 2006-01-22 08:34:46 +00:00
povchem - Drop old povchem.c checksum 2005-11-24 00:02:29 +00:00
primer3 SHA256ify 2006-01-22 08:34:46 +00:00
psi88 SHA256ify 2006-01-22 08:34:46 +00:00
py-biopython Update to 1.41 2005-11-11 01:15:35 +00:00
pymol SHA256ify 2006-01-22 08:34:46 +00:00
rasmol - Add SHA256 2005-11-24 00:04:00 +00:00
recombine - Add SHA256 2005-11-24 00:04:00 +00:00
ruby-bio - Add SHA256 2005-11-24 00:04:00 +00:00
seaview Update to 2006.01.25. 2006-02-09 10:33:47 +00:00
seqio SHA256ify 2006-01-22 08:34:46 +00:00
sim4 - Add SHA256 2005-11-24 00:04:00 +00:00
t_coffee Update to 3.27. 2006-02-10 09:45:28 +00:00
tinker - Add SHA256 2005-11-24 00:04:00 +00:00
treepuzzle SHA256ify 2006-01-22 08:34:46 +00:00
treeviewx Update to 0.5.1 2005-12-06 02:00:55 +00:00
tRNAscan-SE SHA256ify 2006-01-22 08:34:46 +00:00
wise SHA256ify 2006-01-22 08:34:46 +00:00
xdrawchem BROKEN: Configure fails 2006-02-20 01:46:03 +00:00
xmolwt Bump PORTREVISION on glib12/gtk12 consumer ports to ease the upgrade path. 2006-03-07 08:28:06 +00:00
Makefile Add mafft 5.734, multiple sequence alignments based on fast Fourier 2006-03-15 10:41:16 +00:00