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freebsd-ports/science
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Robert Clausecker cb127c6a8d science/chemtool-devel: Fix build on FreeBSD 13.1R and 14 
- Same fix as 4bfc3a9 for science/chemtool.
 - While we are at it, define LICENSE.  The license is not
   shipped, but from the README it is clearly the authors
   intent to have the same license as for science/chemtool.

while I'm here:

 - cleanup Makefile
 - remove unnecessary patch and reinplace cmd
 - add EXAMPLES option
 - add missing LIB_DEPENDS and USE_GNOME deps (Q/A check)
 - adopt port

PR:		265614
2022-08-04 14:37:25 +01:00
..
2d-rewriter
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
abinit
science/abinit: Update 9.4.2 -> 9.6.2
2022-07-29 12:57:36 -07:00
afni
science/afni: update to 22.2.04
2022-08-02 07:31:26 +02:00
agrum
science/agrum: Update 1.1.1 -> 1.2.0
2022-07-29 01:08:49 -07:00
aircraft-datcom
…
ALPSCore
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
antioch
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
apbs
…
ascent
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
atompaw
science/atompaw: Update 4.2.0.0 -> 4.2.0.1
2022-06-13 20:26:14 -07:00
avogadro2
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
avogadrolibs
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
axom
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
bagel
science/bagel: Update 1.2.2 -> 1.2.2-132
2022-06-23 00:39:22 -07:00
bddsolve
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
berkeleygw
science/berkeleygw: Improve BROKEN line
2022-07-19 19:27:06 -07:00
bodr
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
buddy
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
cantera
science/cantera: Minor simplification
2022-06-29 01:21:31 -07:00
cdcl
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
cdf
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
cdk
science/cdk: Update 2.3 -> 2.7.1
2022-06-03 09:49:16 -07:00
cdo
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
cgnslib
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
cgribex
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
checkmol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
chemical-mime-data
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
chemicalfun
science/chemicalfun: Update g20220104 -> 0.1.3
2022-07-17 13:04:09 -07:00
chemps2
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
chemtool
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
chemtool-devel
science/chemtool-devel: Fix build on FreeBSD 13.1R and 14
2022-08-04 14:37:25 +01:00
chimes-calculator
science/chimes-calculator: New port: Chebyshev Interaction Model for Efficient Simulation
2022-01-18 23:05:13 -08:00
ChipmunkPhysics
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
chrono
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
clhep
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
clipper
…
code_saturne
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
colt
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
conduit
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
coordgenlibs
…
cp2k
science/cp2k: Broken on systems where OpenMP isn't enabled
2022-07-24 19:05:43 -07:00
cp2k-data
science/cp2k-data: Update 9.1.0 -> 2022.1
2022-07-11 21:10:07 -07:00
crf++
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
csvtk
all: Bump PORTREVISION after Go update
2022-08-03 16:35:13 -05:00
dakota
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
dalton
…
dcl
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
devisor
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
dftbplus
textproc/toml-f: Update 0.2.3 -> 0.3.0
2022-08-03 10:30:41 -07:00
dftd4
science/dftd4: Update 3.3.0 -> 3.4.0
2022-04-30 12:48:30 -07:00
dkh
…
dlib-cpp
…
drawxtl
…
dvc
…
dynare
science/dynare: Update 5.1 -> 5.2
2022-07-28 17:21:33 -07:00
eccodes
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
elk
science/elk: Update 8.4.21 -> 8.4.30
2022-07-05 15:30:25 -07:00
elmerfem
science/elmerfem: Fix bug that build selected arbitrary Python versions
2022-07-21 10:20:30 -07:00
epte
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
erd
…
ergo
Fix CONFLICTS entries of multiple ports
2022-01-10 16:15:39 +01:00
erkale
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
erkale-pseudopotentials
science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405
2022-05-24 12:51:17 -07:00
fastcap
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
fasthenry
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
fastjet
science/fastjet: Fix CGAL option; Add tests
2022-07-07 10:16:49 -07:00
fisicalab
math/gsl: bump portrevision of consumers after update to 2.7.1
2022-01-12 20:41:22 +01:00
fleur
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
frontistr
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
fsom
…
fvcom
science/netcdf-fortran: Update to 4.5.4
2022-03-08 02:10:59 +08:00
fvcom-mpi
*: Clean up some things
2021-10-12 17:01:38 +02:00
gabedit
science/gabedit: Improve BROKEN lines and options
2022-07-20 12:21:45 -07:00
gamess-us
…
gbtolib
science/gbtolib: Add FFLAGS=-fdefault-integer-8
2022-08-03 01:40:49 -07:00
gchemutils
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
gdma
…
getdp
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
ghemical
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
ghmm
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
gnudatalanguage
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
gpaw-setups
…
gramps
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
grib_api
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
gromacs
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
gsmc
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
gtamsanalyzer
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
h5utils
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
h5z-zfp
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
harminv
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
hdf
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
hdf5
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
hdf5-18
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
hdf5-110
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
healpix
astro/cfitsio: Update to 4.0.0
2022-02-28 23:06:56 +08:00
helfem
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
hepmc3
science/hepmc3: Update 3.2.4 -> 3.2.5
2022-05-12 11:57:53 -07:00
highfive
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
hypre
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
iboview
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
InsightToolkit
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
isaac-cfd
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
jdftx
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
jmol
science/jmol: Update 14.32.63 -> 14.32.66
2022-07-31 21:52:17 -07:00
jstrack
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
kalzium
KDE: Update KDE Gear to 22.04.3
2022-07-07 23:49:42 +02:00
kim-api
science/kim-api: Update 2.2.1 -> 2.3.0
2022-03-19 18:18:45 -07:00
kplib
science/kplib: Remove -march=native to fix build on some architectures
2022-07-23 13:24:58 -07:00
kst2
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
lammps
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
lamprop
…
latte
…
libaec
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libccp4
…
libcint
science/libcint: Update 5.1.2 -> 5.1.3
2022-06-16 11:24:43 -07:00
libctl
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libecpint
science/libecpint: Update 1.0.6 -> 1.0.7
2021-12-14 14:41:53 -08:00
libefp
…
libgeodecomp
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libgetar
science/libgetar: New port: Library to read and write GEneric Trajectory ARchives
2022-06-27 10:58:02 -07:00
libghemical
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libgridxc
…
libint
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libint2
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libkml
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
liblinear
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libmbd
science/libmbd: Update 0.12.4 -> 0.12.5
2022-08-03 10:30:42 -07:00
libmsym
…
libnegf
science/libnegf: Update 1.0.3 -> 1.1.2
2022-05-18 13:51:37 -07:00
liboglappth
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libquantum
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libssm
…
libsvm
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libsvm-python
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
libtensorflow1
science/libtensorflow1: mark BROKEN: tries to fetch during the build
2022-07-21 17:31:12 +03:00
libvdwxc
…
libxc
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
liggghts
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
linux-zotero
science/linux-zotero: Commit zotero.desktop patches & fix Exec
2022-07-29 15:21:06 +02:00
luscus
…
madness
…
maeparser
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
massxpert
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
mbdyn
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
mcstas
…
mcstas-comps
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
mctc-lib
science/mctc-lib: Update 0.3.0 -> 0.3.1
2022-08-03 10:30:42 -07:00
mcxtrace
*/*: fix trailing whitespace in pkg-descr's
2022-04-01 18:09:49 +03:00
mcxtrace-comps
…
mdynamix
*/*: fix trailing whitespace in pkg-descr's
2022-04-01 18:09:49 +03:00
medit
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
meep
science/meep: Fix build on i386
2022-07-27 01:31:14 -07:00
metaphysicl
science/metaphysicl: Update 1.3.2 -> 1.3.3
2021-12-13 09:19:09 -08:00
minc2
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
mmdb2
science/mmdb2: Update 2.0.20 -> 2.0.22
2022-04-30 09:03:26 -07:00
mmtf-cpp
…
mol2ps
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
molgif
all: Bump PORTREVISION after Go update
2022-08-03 16:35:13 -05:00
molscript
…
molsketch
…
mopac
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
mpb
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
mpqc
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
msms
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
2021-10-25 12:58:29 +00:00
mstore
*/*: In 7 ports remove GNU-10.3.0 from install paths
2022-01-18 12:12:05 -08:00
multicharge
science/multicharge: Update 0.1.2 -> 0.2.0
2022-05-05 23:21:10 -07:00
multiwfn
…
namd
Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)
2021-10-25 12:58:29 +00:00
nest
science/nest: remove redundant USES=compiler
2022-05-31 03:06:02 +00:00
netcdf
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
netcdf-cxx
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
netcdf-fortran
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
nifticlib
*/*: Remove redundant '-[0-9]*' from CONFLICTS
2021-10-29 11:50:18 +02:00
nwchem
science/nwchem: Update 7.0.2.20211110 -> 7.0.2.20220224
2022-02-25 10:19:33 -08:00
nwchem-data
…
octopus
science/octopus: Cosmetic changes
2022-05-31 02:12:09 -07:00
openbabel
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
openems
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
openkim
…
openkim-models
science/openkim-models: Update 2021-01-28 -> 2021-08-11
2022-05-08 11:02:07 -07:00
openmc
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
openmolcas
science/openmolcas: Update 22.02 -> 22.06
2022-07-26 10:05:36 -07:00
openmx
…
opensim-core
…
opensph
science/opensph: Update 0.3.8 -> 0.4.0
2022-08-01 00:42:56 -07:00
opsin
…
orthanc
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
orthanc-dicomweb
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
orthanc-mysql
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
orthanc-postgresql
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
orthanc-webviewer
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Algorithm-SVMLight
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-3DBuilder
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Bond-Find
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Canonicalize
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Elements
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-MDLMol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-Mopac
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-PDB
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-SLN
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-SMARTS
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-SMILES
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-VRML
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-File-XYZ
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-FormulaPattern
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-InternalCoords
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Isotope
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-MacroMol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-MidasPattern
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Mok
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Mol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Pattern
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Reaction
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Chemistry-Ring
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Geo-BUFR
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Geo-Coordinates-Converter
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Geo-Coordinates-Converter-iArea
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Geo-WebService-Elevation-USGS
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Mcstas-Tools
…
p5-PerlMol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
p5-Physics-Unit
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
packmol
…
pagmo2
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
paje
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
paraview
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
pastix
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
pcmsolver
science/pcmsolver: Remove CMAKE_EXE_LINKER_FLAGS from cmake configure arguments
2022-07-17 13:48:20 -07:00
PETSc
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
phonopy
science/phonopy: Update 2.15.0 -> 2.15.1
2022-05-28 21:52:24 -07:00
plumed
science/plumed: Use upsteam release archive
2022-05-23 13:39:54 +02:00
pnetcdf
science/pnetcdf: Fix build on i386
2022-07-31 03:24:09 +08:00
precice
science/precice: Add options; Backport patch provided by upstream
2022-06-21 14:02:33 -07:00
pulseview
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-abipy
…
py-access
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-asap3
science/py-asap3: Fix python suffix in shared library name
2022-06-29 01:17:56 -07:00
py-asdf
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-asdf-standard
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-asdf-transform-schemas
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-ase
science/py-ase: Add test target
2022-06-19 03:01:29 -07:00
py-avogadrolibs
science/py-avogadrolibs: Update 1.94.0 -> 1.95.1
2022-02-05 01:44:22 -08:00
py-cdo
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-chainer
devel/protobuf: Update to 3.20.0
2022-04-16 12:19:07 +08:00
py-chainer-chemistry
…
py-chempy
science/py-chempy: switch to USES=pytest, fix tests and document failing ones
2022-04-26 20:26:11 +03:00
py-cirq-aqt
science/py-cirq-*: Add comments
2022-07-30 10:37:22 -07:00
py-cirq-core
science/py-cirq-*: Add comments
2022-07-30 10:37:22 -07:00
py-cirq-google
science/py-cirq-*: Add comments
2022-07-30 10:37:22 -07:00
py-cirq-ionq
science/py-cirq-*: Add comments
2022-07-30 10:37:22 -07:00
py-cirq-pasqal
science/py-cirq-*: Add comments
2022-07-30 10:37:22 -07:00
py-cirq-rigetti
science/py-cirq-*: Add comments
2022-07-30 10:37:22 -07:00
py-coards
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-DendroPy
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-dipy
science/py-dipy: Update 1.4.1 -> 1.5.0
2022-04-24 12:42:21 -07:00
py-dlib
…
py-eccodes
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-esda
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-fresnel
math/qhull: Renaming ports
2022-02-18 15:15:30 -06:00
py-geolinks
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-geomet
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-geometer
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-geometric
…
py-gpaw
science/py-gpaw: Update 21.6.0 -> 22.1.0
2022-01-13 02:25:40 -08:00
py-GPy
science/py-GPy: Broken on systems where OpenMP isn't enabled
2022-07-23 18:18:46 -07:00
py-GPyOpt
…
py-gsd
science/py-gsd: Update 2.5.2 -> 2.5.3
2022-07-29 01:46:45 -07:00
py-h5json
…
py-h5py
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
py-hiphive
science/py-hiphive: Update 1.0 -> 1.1
2022-05-07 10:11:29 -07:00
py-hoomd-blue
science/py-hoomd-blue: Update 3.1.0 -> 3.2.0
2022-05-19 19:10:19 -07:00
py-inequality
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-jupyter_jsmol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-kim-query
science/py-kim-query: Update 1.1.0 -> 3.0.0
2022-05-08 11:02:07 -07:00
py-kinematics
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-kliff
science/py-kliff: Update 0.3.3 -> 0.4.0
2022-04-29 12:40:02 -07:00
py-kpLib
science/py-kpLib: Correct dependencies
2022-07-21 15:34:14 -07:00
py-liac-arff
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-libgetar
science/py-libgetar: Fix tests
2022-06-27 15:39:42 -07:00
py-libpysal
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-lifelines
…
py-MDAnalysis
science/py-MDAnalysis*: upgrade to 2.2.0
2022-06-21 19:26:21 +02:00
py-MDAnalysisTests
science/py-MDAnalysis*: upgrade to 2.2.0
2022-06-21 19:26:21 +02:00
py-mdp
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-mmtf-python
…
py-molmod
…
py-moltemplate
science/py-moltemplate: Update 2.20.5 -> 2.20.6
2022-07-01 15:41:38 -07:00
py-netCDF4
science/py-netCDF4: Update version 1.5.8=>1.6.0
2022-07-26 10:53:14 -05:00
py-netcdf-flattener
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-nibabel
science/py-nibabel: Update 3.2.1 -> 3.2.2
2022-04-24 12:42:19 -07:00
py-nilearn
science/py-nilearn: Add comment
2022-07-15 23:41:57 -07:00
py-obspy
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-oddt
science/py-oddt: Not install tests
2022-03-25 10:28:34 -07:00
py-OpenFermion
science/py-OpenFermion: Update 1.3.0 -> 1.5.0
2022-07-28 19:20:35 -07:00
py-OpenMC
science/{,py-}openmc: Update 0.12.2 -> 0.13.0
2022-05-08 13:55:59 -07:00
py-openpiv
science/py-openpiv: update to 0.23.8
2021-11-06 00:17:44 +03:00
py-paida
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-paramz
…
py-phono3py
…
py-phonopy
science/py-phonopy: Update 2.14.0 -> 2.15.1
2022-06-05 23:31:07 -07:00
py-PubChemPy
…
py-pupynere
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-py3Dmol
science/py-py3Dmol: New port: IPython interface for embedding 3Dmol.js views
2022-06-15 13:56:03 -07:00
py-pyaixi
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-pyberny
science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy
2021-10-16 16:56:19 -07:00
py-pycsw
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-pydicom
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-PyFR
science/py-PyFR: Update 1.13.0 -> 1.14.0
2022-05-05 23:21:10 -07:00
py-pygeodesy
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-pygeometa
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-pygmo2
devel/boost-all: bump all library consumers after boost upgrade
2022-05-22 23:17:16 +03:00
py-pyked
devel/py-pint: Update to 0.19.1
2022-04-18 07:58:18 +08:00
py-pymatgen
science/py-pymatgen: Update 2022.4.26 -> 2022.7.19
2022-07-29 01:08:50 -07:00
py-pymbd
science/py-pymbd: New port: Many-body dispersion library
2022-08-03 10:52:01 -07:00
py-pymol
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-PyNE
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
py-pyosf
…
py-pyprecice
science/py-pyprecice: New port: Coupling library for partitioned multi-physics simulations
2022-06-20 09:53:12 -07:00
py-pysal
science/py-pysal: Update USES=python
2022-07-31 03:25:02 +08:00
py-pyscf
science/py-pyscf: Unbreak fetch
2022-01-12 20:40:22 -08:00
py-pyteomics
science/py-pyteomics: Update to 4.5.4
2022-07-30 13:58:16 +08:00
py-qcelemental
science/py-qcelemental: Update 0.24.0 -> 0.25.0
2022-06-15 13:56:03 -07:00
py-qcengine
devel/py-pint: Update to 0.19.1
2022-04-18 07:58:18 +08:00
py-qspin
science/py-qspin: Fix build with setuptools 58.0.0+
2022-03-25 21:38:19 +08:00
py-quantities
science/py-quantities: Update 0.12.5 -> 0.13.0
2022-01-14 08:48:13 -08:00
py-rmf
science/{,py-}rmf: Update 1.3.1 -> 1.4
2022-03-11 08:59:47 -08:00
py-rmsd
…
py-ruffus
…
py-scikit-fuzzy
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-scikit-learn
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-scikit-optimize
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-scikit-sparse
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-scimath
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-scipy
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-scoria
…
py-segregation
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-segyio
science/py-segyio: switch to USES=pytest and fix tests
2022-04-26 16:46:03 +03:00
py-SimpleSpectral
…
py-sklearn-pandas
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-skrebate
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-spaghetti
science/py-spaghetti: Update to 1.6.6
2022-07-31 03:25:03 +08:00
py-spglib
science/{,py-}spglib: Update 1.16.3 -> 1.16.5
2022-05-07 22:27:10 -07:00
py-tensorflow
science/py-tensorflow: mark BROKEN
2022-07-21 23:49:19 +03:00
py-thewalrus
science/py-thewalrus: New port: Open source library for hafnian calculation
2022-05-31 20:42:38 -07:00
py-tobler
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
py-trainstation
science/py-trainstation: New port: Convenient training of linear models
2022-03-07 12:14:14 -08:00
py-veusz
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
pybrain
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
pynn
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
q
science/q: New port: Molecular Dynamics (MD) tools
2022-05-23 18:54:08 -07:00
qbox
science/qbox: Update 1.74.3 -> 1.74.4
2022-07-20 15:00:05 -07:00
qcl
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
qiskit-aer
…
qmcpack
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
quantum-espresso
…
quantum-espresso-pseudopotentials
…
quantum-jet
science/quantum-jet: New port: Cross-platform header-only library for simulating quantum circuits
2022-05-31 13:02:18 -07:00
qwalk
textproc/libxml2: bump all LIB_DEPENDS consumers
2022-04-10 15:11:41 -04:00
R-cran-AMORE
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-bayesm
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-cmprsk
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-DCluster
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-e1071
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-eco
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-Epi
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-epicalc
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-etm
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-FAdist
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-fastICA
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-kernlab
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-ks
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-snow
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-som
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
R-cran-udunits2
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rdkit
science/rdkit: Update 2022.03.3 -> 2022.03.4
2022-07-05 20:20:52 -07:00
rmf
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
rubygem-ai4r
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-cdo
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-rgeo
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-rgeo-geojson
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-rgeo-proj4
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-rgeo-shapefile
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-ruby-dcl
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
rubygem-ruby-netcdf
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
scidavis
science/scidavis: tell portscout to ignore old tag
2022-05-10 21:31:45 +03:00
segyio
devel/cmake: Update to 3.23.0
2022-05-16 08:49:43 +02:00
shelxle
science/shelxle: Update 1.0.1401 -> 1.0.1406
2022-07-05 20:20:52 -07:00
siconos
cleanup: drop support for EOL FreeBSD 11.X
2021-09-30 23:23:30 +02:00
siesta
science/siesta: unbreak on powerpc* / main
2022-07-04 02:00:31 +02:00
sigrok-cli
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
sigrok-firmware
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
sigrok-firmware-fx2lafw
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
sigrok-firmware-utils
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
silo
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
simbody
…
simgrid
science/simgrid: Update 3.28 -> 3.31
2022-07-24 12:15:38 -07:00
simint
…
simlib
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
simple-dftd3
textproc/toml-f: Update 0.2.3 -> 0.3.0
2022-08-03 10:30:41 -07:00
simsmith
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
smoldyn
science/smoldyn: Update 2.67 -> 2.68
2022-07-31 01:12:49 -07:00
sparta
science/sparta: Update 7Jan2022 -> 18Jul2022
2022-07-18 19:09:00 -07:00
spglib
science/spglib: fix build without libomp
2022-05-31 03:05:56 +00:00
step
KDE: Update KDE Gear to 22.04.3
2022-07-07 23:49:42 +02:00
svmlight
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
tblite
textproc/toml-f: Update 0.2.3 -> 0.3.0
2022-08-03 10:30:41 -07:00
teem
…
tfel
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
tfel-edf
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
thermofun
science/thermofun: Fix test target
2022-07-18 00:12:23 -07:00
tinker
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
trilinos
science/trilinos: Broken on armv6, armv7
2022-07-23 18:39:13 -07:00
udunits
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
ukrmol+
science/ukrmol+: Add FFLAGS=-fdefault-integer-8 to fix tests; Remove WITH_GSL
2022-08-03 01:40:50 -07:00
v_sim
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
vipster
…
vmd
science: remove 'Created by' lines
2022-07-20 16:22:51 +02:00
voro++
…
votca
science/hdf5: bump PORTREVISION of consumers
2022-07-20 16:35:24 +02:00
wannier90
…
wwplot
…
wxmacmolplt
…
xcfun
…
xcrysden
framework: Add new USES 'magick' for graphics/ImageMagick*
2021-12-11 14:50:53 +01:00
xdrawchem
…
xtb
science/xtb: Broken on systems where OpenMP isn't enabled
2022-08-04 00:41:23 -07:00
yoda
science/yoda: Update 1.9.4 -> 1.9.6
2022-07-31 01:12:48 -07:00
zotero
devel/libffi: Bump deps PORTREVISION for shlib change
2022-05-09 12:23:51 -07:00
Makefile
science/py-pymbd: New port: Many-body dispersion library
2022-08-03 10:52:01 -07:00