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MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly. MEGAHIT can optionally utilize a CUDA-enabled GPU to accelerate its SdBG contstruction.
15 lines
396 B
Plaintext
15 lines
396 B
Plaintext
bin/megahit
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bin/megahit_core
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bin/megahit_core_no_hw_accel
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bin/megahit_core_popcnt
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bin/megahit_toolkit
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%%DATADIR%%/test_data/empty.fa
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%%DATADIR%%/test_data/generate_random_fasta.py
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%%DATADIR%%/test_data/loop.fa
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%%DATADIR%%/test_data/r1.il.fa.gz
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%%DATADIR%%/test_data/r2.il.fa.bz2
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%%DATADIR%%/test_data/r3_1.fa
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%%DATADIR%%/test_data/r3_2.fa
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%%DATADIR%%/test_data/r4.fa
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%%DATADIR%%/test_data/ref.fa
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