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freebsd-ports/science
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Ben Woods 3b4087e5ec science/InsightToolkit: 
- Update to 4.10.0
- Add ITK_VER variable to Makefile to simplify future pkg-plist updates
- Convert to USES=jpeg
- Add dependency on science/szip (notified by new stage-qa warning)

Changes this release:
  http://public.kitware.com/pipermail/community/2016-June/011491.html

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D6737
2016-06-06 18:10:07 +00:00
..
2d-rewriter - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
afni - Fix trailing whitespace in pkg-messages 2016-05-19 11:09:14 +00:00
avogadro Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
bddsolve many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
bft
bodr Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
brian Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
buddy
cdcl
cdf science/cdf: document ncurses requirement (USES+=ncurses) 2016-02-01 06:50:21 +00:00
cdo - Use USES=localbase 2016-04-23 06:46:51 +00:00
cgnslib - Update to 1.10.0 2016-04-20 20:42:39 +00:00
cgribex Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
checkmol Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
chemical-mime-data Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
chemtool Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
chemtool-devel Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
clhep science/clhep: Update version 2.2.0.8=>2.3.1.1 2016-04-10 21:01:55 +00:00
colt - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
crf++ Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
dcl
devisor - Switch to options helpers 2015-09-24 21:19:27 +00:00
dlpoly-classic Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ecs Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
epte
fastcap
fasthenry
fisicalab Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom-mpi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvm Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
gchemutils Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
getdp Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ghemical - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
ghmm - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gnudatalanguage Remove NLS, DOCS, EXAMPLES and IPV6 from OPTIONS_DEFAULT, they are enabled by default anyway and don't need to be listed 2016-05-23 20:35:01 +00:00
gramps science/gramps: Update to 4.2.3 2016-05-19 21:16:11 +00:00
grib_api - Update to 1.14.7 2016-04-17 18:40:09 +00:00
gromacs Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
gsmc - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gtamsanalyzer Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
gwyddion Update to 2.45. 2016-05-09 13:43:34 +00:00
h5utils - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
harminv - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
hdf many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
hdf5 - Fix build with 1.8.x installed 2016-04-23 06:46:55 +00:00
hs-bio
InsightToolkit science/InsightToolkit: 2016-06-06 18:10:07 +00:00
isaac-cfd
jmol Deprecate ports broken for more than 6 months 2016-06-03 16:44:58 +00:00
jstrack - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
kalzium Remove expired misc/kdehier4 and update all of its consumers to not reference it any 2016-05-25 20:56:06 +00:00
kst2 Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
lamprop
libctl Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
libghemical Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
libint - Update to version 1.1.6 2015-10-24 17:55:23 +00:00
libkml - Resolve conflict with archivers/minizip: rename libminizip to libkmlminizip 2016-04-07 13:28:46 +00:00
liblinear - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
liboglappth Remove trailing whitespace from Makefiles, M-X. 2015-10-08 15:12:22 +00:00
libquantum Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
libsvm science/libsvm: Update to version 3.21. 2016-03-09 16:43:49 +00:00
libsvm-python
libxc - Update to 3.0.0 2016-05-11 15:03:12 +00:00
linsmith Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
massxpert Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mbdyn Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mcstas - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
mcstas-comps - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
medit Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
meep - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
mei Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
metaf2xml science/metaf2xml: update 1.57 -> 1.58 2016-01-04 13:49:17 +00:00
minc2 - Fix build 2016-05-25 14:57:25 +00:00
mol2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mpb - Update to 1.10.0 2016-04-20 20:42:39 +00:00
mpqc Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mpqc-mpich - Add missing manpage 2015-10-01 07:04:30 +00:00
ncs Remove useless WRKSRC definitions. 2016-05-25 15:43:34 +00:00
netcdf - Update to 1.10.0 2016-04-20 20:42:39 +00:00
netcdf-cxx - Update to 4.3.0 2016-05-15 16:12:00 +00:00
netcdf-fortran - Update to 4.4.4 2016-05-15 16:12:04 +00:00
nifticlib - Update maintainer mail address 2015-12-11 08:48:56 +00:00
openbabel many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
openkim - Update maintainer mail address 2015-12-11 08:48:56 +00:00
orthanc - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
orthanc-dicomweb devel/jsoncpp: bump portrevision for dependent ports for shlib change .0 -> .1 2016-05-17 18:01:15 +00:00
orthanc-postgresql devel/jsoncpp: bump portrevision for dependent ports for shlib change .0 -> .1 2016-05-17 18:01:15 +00:00
orthanc-webviewer devel/jsoncpp: bump portrevision for dependent ports for shlib change .0 -> .1 2016-05-17 18:01:15 +00:00
p5-Algorithm-SVMLight Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-BUFR - Update to 1.33 2016-04-25 09:11:46 +00:00
p5-Geo-Coordinates-Converter Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
p5-PerlMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Physics-Unit Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
paje Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
paraview - Update to 1.10.0 2016-04-20 20:42:39 +00:00
pnetcdf Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
psychopy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pulseview Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-cdo Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-coards Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org 2016-05-25 16:54:30 +00:00
py-DendroPy Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-h5py Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org 2016-05-25 16:54:30 +00:00
py-hcluster - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
py-mdp science/py-mdp: Update version 3.3=>3.5 2016-04-10 19:04:12 +00:00
py-mlpy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-netCDF4 - Update to 1.10.0 2016-04-20 20:42:39 +00:00
py-obspy Reorganise and modernise the py-sqlalchemy ports. 2016-05-22 10:52:44 +00:00
py-paida Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-pupynere Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org 2016-05-25 16:54:30 +00:00
py-pyaixi Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org 2016-05-25 16:54:30 +00:00
py-pydicom
py-pysal - Update to 1.11.2 2016-05-23 03:50:47 +00:00
py-pyteomics Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-pyteomics.biolccc Rename my ports to comply with Python ports policy 2015-11-02 09:24:50 +00:00
py-scikit-fuzzy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scikit-learn Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scikit-sparse Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scimath Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scipy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-ws2300
pybrain - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
pycdf Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pynn - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
qcl - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
qtresistors Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
R-cran-AMORE
R-cran-bayesm - Update to 3.0.2 2016-05-26 01:29:33 +00:00
R-cran-cmprsk - Add new port: science/R-cran-cmprsk 2015-11-08 05:46:50 +00:00
R-cran-DCluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-epicalc
R-cran-etm - Add new port: science/R-cran-etm 2015-11-08 06:15:14 +00:00
R-cran-snow - Update to 0.4-1 2015-12-06 11:01:46 +00:00
R-cran-som Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
rubygem-ai4r Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-cdo Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-dcl Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
sigrok-cli - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
sigrok-firmware Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo - Update to 1.10.0 2016-04-20 20:42:39 +00:00
simlib many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
simsmith
step Remove expired misc/kdehier4 and update all of its consumers to not reference it any 2016-05-25 20:56:06 +00:00
svmlight
szip - Convert to new test framework 2015-10-01 15:56:21 +00:00
udunits Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
v_sim Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
veusz Mark BROKEN: fails to configure 2016-06-04 12:36:08 +00:00
vmd Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
voro++ - Update maintainer mail address 2015-12-11 08:48:56 +00:00
xfce4-equake-plugin
xmakemol - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
Makefile Remove expired ports: 2016-04-23 15:15:44 +00:00