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mirror of https://git.FreeBSD.org/ports.git synced 2024-11-25 00:51:21 +00:00
freebsd-ports/biology
Alexey Dokuchaev 9dc680d0e8 - Update to version 1.13.0 and improve FreeBSD support; it also builds
pretty cleanly with GCC v4.2, v4.6, and Clang (modulo a few warnings)
- Sadly, do not use PORTDOCS: since DOCSDIR is set to be inside DATADIR,
  and will get appended to PLIST after @dirrm %%DATADIR%%, which upsets
  sanity checking tools; instead, list the docs explicitly in DISTFILES
  and add them to pkg-plist (guarded by %%PORTDOCS%%)

Tested on:	i386 (only)
2014-01-16 17:17:15 +00:00
..
ariadne
artemis
avida
babel Support stage 2014-01-15 22:44:13 +00:00
biococoa
biojava
blast
blat
boinc-simap
chemeq
clustalw
consed
crux Python cleanup: 2014-01-13 21:00:02 +00:00
embassy Reduce over inclusion of bsd.port.mk 2014-01-15 22:48:32 +00:00
emboss
fasta Reduce over inclusion of bsd.port.mk 2014-01-15 22:50:18 +00:00
fasta3 Mark as broken: Invalid checksum, seems like the software was rerolled 2014-01-03 19:46:05 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview
lagan
lamarc
libgenome
libsbml Reduce over inclusion of bsd.port.mk 2014-01-15 22:50:50 +00:00
linux-foldingathome
mafft
mapm3 - Fix build with clang 2014-01-12 19:07:28 +00:00
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene - add stage support 2014-01-06 09:57:19 +00:00
p5-Bio-Das - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo - support stage 2014-01-05 12:07:20 +00:00
p5-Bio-SCF - add stage support 2014-01-06 09:44:19 +00:00
p5-bioperl
p5-bioperl-run
paml
phd2fasta
phrap
phred
phylip
phyml
platon
plink
plinkseq
povchem
primer3
protomol Reduce over inclusion of bsd.port.mk 2014-01-15 22:51:26 +00:00
psi88
py-biopython Python cleanup: 2014-01-13 21:00:02 +00:00
pycogent
pyfasta Python cleanup: 2014-01-13 21:00:02 +00:00
pymol
python-nexus
rasmol
recombine
ruby-bio Reduce over inclusion of bsd.port.mk 2014-01-15 22:52:28 +00:00
seaview
seqan
seqio
seqtools
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
ugene - Update to version 1.13.0 and improve FreeBSD support; it also builds 2014-01-16 17:17:15 +00:00
velvet
wise
xmolwt
Makefile