Yuri Victorovich 11f6ef1ffb biology/biosig: Update 2.4.2 -> 2.4.3 ... Reported by: portscout		2022-10-09 12:02:15 -07:00
..
abyss
ad2vcf
artemis
avida
babel
bamtools
bamutil
bbmap
bcftools
bedtools
bfc
bio-mocha
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig	biology/biosig: Update 2.4.2 -> 2.4.3	2022-10-09 12:02:15 -07:00
biosoup
biostar-tools
bolt-lmm
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond
dsr-pdb
edlib
emboss
erminej
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastq-trim
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gffread
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite	biology/hhsuite: Disable on 32-bit architectures following upstream advice	2022-10-01 11:16:04 -07:00
hisat2
hmmer
htslib
hyphy	biology/hyphy: Not broken on systems where OpenMP isn't available	2022-10-01 13:59:13 -07:00
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
kmcp	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
lamarc
libbigwig
libgff
libgtextutils
libneurosim
libnuml
libsbml
libsedml
linux-foldingathome
mafft
mapm3
migrate
minimap2
mmseqs2
molden
mothur
mrbayes
mummer
muscle
ncbi-blast+	devel/grpc: Update to 1.49.0	2022-10-03 10:14:06 +08:00
ncbi-cxx-toolkit
ncbi-entrez-direct	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler
primer3
prodigal
prodigy-lig
protomol
psi88	Remove WWW lines that have been moved into Makefiles	2022-09-08 17:46:38 +02:00
py-bcbio-gff
py-biom-format
py-biopython
py-bx-python
py-crossmap
py-cutadapt
py-deeptools
py-deeptoolsintervals
py-dna-features-viewer
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml
py-libsedml
py-loompy
py-macs2
py-mrcfile	biology/py-mrcfile: Update 1.4.2 -> 1.4.3	2022-09-24 14:54:24 -07:00
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics	all: deprecate ports depending on expired security/py-keyrings.alt	2022-09-30 22:06:28 +02:00
py-orange3-single-cell	all: deprecate ports depending on expired security/py-keyrings.alt	2022-09-30 22:06:28 +02:00
py-pandas-charm
py-py2bit
py-pybigwig
py-pyfaidx
py-pysam
py-PySCeS	biology/py-PySCeS: Update 1.0.2 -> 1.0.3	2022-09-26 01:18:31 -07:00
py-python-libsbml	*/*: Update path set in BUILD_DEPENDS for CMake	2022-09-09 22:32:24 +02:00
py-pywgsim
py-resdk
py-scikit-bio
py-valerius	biology/py-valerius: New port: Python bioinformatics tools	2022-10-03 21:06:22 -07:00
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
ruby-bio
rubygem-bio	biology/rubygem-bio: Update to 2.0.4	2022-10-03 10:17:49 +08:00
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps
seqio
seqkit	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
seqtk
sigviewer	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
sim4	Remove WWW lines that have been moved into Makefiles	2022-09-08 17:46:38 +02:00
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
unikmer	all: Bump PORTREVISION after lang/go{118,119} update	2022-10-06 14:24:26 -05:00
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch	biology/vsearch: Update to 2.22.1	2022-09-21 11:24:14 -05:00
vt
wise
Makefile	biology/py-valerius: New port: Python bioinformatics tools	2022-10-03 21:06:22 -07:00