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8b1d897ff6
freebsd-ports/science
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Sunpoet Po-Chuan Hsieh 8b1d897ff6 Update science/hdf5 to 1.10.1 
- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt
2017-05-30 02:56:43 +00:00
..
2d-rewriter - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
afni Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
avogadro Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
bddsolve devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
bft
bodr - Add LICENSE 2017-05-02 09:00:11 +00:00
brian math/py-numpy: track PORTEPOCH in consumers 2016-10-28 17:13:24 +00:00
buddy
cdcl Mark some ports failing on armv6, for errors classified as "linker_error". 2017-05-27 22:16:50 +00:00
cdf Mark some ports failing on aarch64, and, in a few cases, other tier-2 2017-05-03 01:14:05 +00:00
cdo Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
cgnslib Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
cgribex Add GRIB_API option 2017-02-12 08:20:20 +00:00
checkmol - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:48:32 +00:00
chemical-mime-data Use USES=pathfix where applicable. 2016-10-21 15:21:13 +00:00
chemtool Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
chemtool-devel Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
clhep Mark some ports failing on power64. In cases where the error message 2017-05-13 23:36:16 +00:00
colt The output of tools like awk, date, sort, tr,... depends on the current 2017-01-18 13:20:31 +00:00
crf++ Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
dcl Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
devisor
dlpoly-classic Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ecs Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
epte science/epte: Add forgetten patch hunk from previous commit 2016-08-28 05:56:01 +00:00
fastcap Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fasthenry Mark as broken on aarch64: fails to link with sbrk. 2016-11-10 01:21:43 +00:00
fisicalab Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
fvcom Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
fvcom-mpi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvm Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
gchemutils Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
getdp Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
ghemical Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
ghmm - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
gnudatalanguage Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
gramps science/gramps: Update to 4.2.5 2016-12-19 12:52:40 +00:00
grib_api Update to 1.21.0 2017-04-02 02:37:25 +00:00
gromacs devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
gsmc Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
gtamsanalyzer
gwyddion Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
h5utils Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
harminv Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hdf Mark some ports failing on aarch64, and, in a few cases, other tier-2 2017-05-03 01:14:05 +00:00
hdf5 Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
hdf5-18 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hs-bio
iboview Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
InsightToolkit Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
isaac-cfd Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
jstrack Remove libtiff.so.4 compatibility links that were added in r374303 to 2016-12-08 16:07:33 +00:00
kalzium Chase ffmpeg 3.3 update (ABI changes) 2017-04-25 08:20:30 +00:00
kst2 Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
lamprop
libaec Fix CONFLICTS_INSTALL 2017-05-27 19:42:13 +00:00
libctl Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
libgeodecomp devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
libghemical Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
libint Update the comment explaining the use of USE_GCC=yes to current 2017-05-14 20:18:04 +00:00
libkml Mark some ports failing on power64. In cases where the error message 2017-05-22 22:29:17 +00:00
liblinear - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
liboglappth Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
libquantum
libsvm - Sort out options (for instance, OPTIMIZED_CFLAGS does not belong to python slave port) 2017-04-12 09:56:35 +00:00
libsvm-python
libxc Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
linsmith
massxpert Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mbdyn Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mcstas Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
mcstas-comps Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
medit Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
meep Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
mei Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
metaf2xml The correct way to check for Perl's version is with PERL_LEVEL. 2016-10-27 17:21:09 +00:00
minc2 Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
mol2ps - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:50:29 +00:00
mpb Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
mpqc Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mpqc-mpich
ncs Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
netcdf Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
netcdf-cxx - Update to 4.3.0 2016-05-15 16:12:00 +00:00
netcdf-fortran Add LICENSE 2017-04-17 16:06:01 +00:00
nifticlib Pass -fPIC when building the port's static libraries. 2016-12-28 14:54:37 +00:00
openbabel science/openbabel: Update to 2.4.1 2017-05-24 01:43:00 +00:00
openkim Mark some ports failing on armv6, for errors classified as "???", 2017-05-27 00:20:19 +00:00
orthanc Mark some ports failing on power64. In cases where the error message 2017-05-20 12:02:07 +00:00
orthanc-dicomweb devel/google{test,mock}: update to 1.8.0.50 2017-05-18 23:22:00 +00:00
orthanc-postgresql devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-webviewer devel/google{test,mock}: update to 1.8.0.50 2017-05-18 23:22:00 +00:00
p5-Algorithm-SVMLight Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements - Update to 1.071 2016-12-31 13:34:26 +00:00
p5-Chemistry-File-MDLMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
p5-Chemistry-Mol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-BUFR - Update to 1.36 2016-12-03 07:59:16 +00:00
p5-Geo-Coordinates-Converter Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools Those ports build fine with bsd make 2016-12-11 08:25:56 +00:00
p5-PerlMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Physics-Unit Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
paje
paraview Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
pnetcdf Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
psychopy - Update to 1.85.1 2017-05-23 01:38:28 +00:00
pulseview devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
py-cdo Update to 1.3.3 2017-02-25 09:55:24 +00:00
py-coards Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-DendroPy Update to 4.2.0 2017-03-29 21:16:07 +00:00
py-h5py Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
py-hcluster - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
py-mdp science/py-mdp: Update version 3.3=>3.5 2016-04-10 19:04:12 +00:00
py-mlpy Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
py-netCDF4 Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
py-obspy Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-paida Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
py-pupynere Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. 2016-06-23 09:48:53 +00:00
py-pyaixi Convert CC license names to r421995 spellings 2016-09-28 06:38:00 +00:00
py-pydicom Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
py-pysal - Update to 1.13.0 2016-12-12 20:58:04 +00:00
py-pyteomics Update to 3.4.1. 2017-02-22 01:45:24 +00:00
py-pyteomics.biolccc Reassign makc's ports back to the pool. 2016-10-20 15:58:12 +00:00
py-scikit-fuzzy - Update to 0.2 2016-06-30 08:09:29 +00:00
py-scikit-learn Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-scikit-sparse Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-scimath Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scipy - Fix build with gcc5 2017-05-05 14:42:02 +00:00
py-ws2300 - Update to 1.10 2016-12-29 01:39:00 +00:00
pybrain - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
pycdf In several dozen ports, use single space for WWW: line in pkg-descr, and 2016-11-22 14:04:21 +00:00
pynn - Update to 0.9.1 2017-05-23 02:34:02 +00:00
qcl - Fix trailing whitespace in pkg-descrs, categories [p-x]* 2016-05-19 10:53:05 +00:00
qtresistors Convert tab after WWW: in pkg-descrs to single space as per PHB 2016-05-23 18:36:52 +00:00
R-cran-AMORE
R-cran-bayesm - Update to 3.0.2 2016-05-26 01:29:33 +00:00
R-cran-cmprsk
R-cran-DCluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-e1071 - Update to 1.6-8 2017-05-07 07:46:15 +00:00
R-cran-eco
R-cran-Epi - Update to 2.12 2017-05-07 07:39:46 +00:00
R-cran-epicalc
R-cran-etm
R-cran-snow - Update to 0.4-2 2016-10-16 04:21:12 +00:00
R-cran-som - Update to 0.3-5.1 2016-07-21 03:18:24 +00:00
rubygem-ai4r Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-cdo Update to 1.3.3 2017-02-25 09:55:29 +00:00
rubygem-ruby-dcl Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf science/rubygem-ruby-netcdf: update to 0.7.2 2017-01-02 14:59:14 +00:00
sigrok-cli Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware Take maintainership. 2016-10-09 21:25:24 +00:00
sigrok-firmware-fx2lafw science/sigrok-firmware-fx2lafw: Update to version 0.1.4. 2016-11-03 18:30:42 +00:00
sigrok-firmware-utils Take maintainership. 2016-10-09 21:25:24 +00:00
silo Update science/hdf5 to 1.10.1 2017-05-30 02:56:43 +00:00
simlib Fix some misspellings that crept in on the last tier-2 cleanup pass. 2016-11-16 09:29:15 +00:00
simsmith
step Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
svmlight - With license framework, there's no longer need to shove license to docs, pkgmessage and restricted 2017-01-30 09:01:22 +00:00
szip Fix CONFLICTS_INSTALL 2017-05-27 19:42:13 +00:00
tfel Cleanup. 2017-05-04 20:30:48 +00:00
udunits Update to 2.2.25 2017-05-20 21:50:06 +00:00
v_sim Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
veusz Switch ports to use USE_PYQT=<foo> instead of using RUN_- and BUILD_DEPENDS 2017-02-04 13:37:15 +00:00
vmd Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8.1 2017-03-05 08:09:35 +00:00
xmakemol Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
Makefile science/iboview: new port. iboview is an advanced program for analyzing molecular electronic structure. 2017-05-02 02:46:41 +00:00