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freebsd-ports/science
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Dmitry Marakasov 33e3d901d4 Convert most of remaining ports that depend on xorg-libraries to 
modular xorg.

- supply corresponding USE_XORG for all imake-using ports that need it
- USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG
- retire USE_X_PREFIX which is not really used anywhere after the
  above change
- a few minor nits like whitespace and SF macro

Tested by:	2 tinderbox runs by pav
Approved by:	portmgr (pav)
2009-06-09 15:33:28 +00:00
..
2d-rewriter Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
2dhf Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
abinit Fix build with NOPORTDOCS, NOPORTEXAMPLES. 2009-04-24 10:26:05 +00:00
afni Fix science/afni after X.org 7.4 import (needs Xi). 2009-01-24 10:02:09 +00:00
at Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
avogadro - Update to 0.9.6 2009-06-07 19:01:09 +00:00
bblimage
bft Upgrade to 1.0.8. 2009-01-26 17:52:44 +00:00
bodr
brian Brian is a simulator for spiking neural networks available on almost all 2009-03-16 06:07:37 +00:00
buddy
cdcl
cdf - Update maintainer mail address 2009-04-05 20:50:49 +00:00
cdo - Update to 1.3.1 2009-06-05 17:13:55 +00:00
cgnslib Switch to USE_FORTRAN. 2009-01-10 14:49:34 +00:00
chemical-mime-data
chemtool Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging with 2009-04-05 12:29:44 +00:00
chemtool-devel
clhep - Use my FreeBSD address on the ports I maintain 2009-03-06 18:14:36 +00:00
colt
crf++
dcl - Use USE_FORTRAN knob 2009-01-20 08:24:11 +00:00
devisor
dft++ Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
dtiquery
ecs Upgrade to 1.3.3. 2009-01-26 17:52:55 +00:00
elmer-eio - No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now 2009-01-20 17:35:18 +00:00
elmer-fem - We need use FCFLAGS to build it in AMD64 and IA64. 2009-01-21 00:36:06 +00:00
elmer-hutiter - No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now 2009-01-20 17:35:18 +00:00
elmer-matc Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
elmer-meshgen2d - Mark as UNBROKEN on AMD64. 2009-02-20 01:35:46 +00:00
elmerfront - Mark BROKEN: does not compile (../include/ecif_userinterface_TCL.h:41:17: 2009-03-13 14:25:43 +00:00
elmergrid
elmerpost Mark broken: fails to compile on i386 and sparc64. 2009-03-16 08:43:58 +00:00
euler
fastcap
fasthenry
felt
flounder - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
fvm Upgrade to 0.12.0. 2009-01-26 17:52:46 +00:00
g3data Update to 1.5.3. 2009-01-12 20:21:31 +00:00
gamess Fix build on amd64 and now it's usable. 2009-06-08 07:07:19 +00:00
gave - Fix for new ruby-gettext 2009-03-25 12:05:43 +00:00
gchemutils Chase the goffice update. 2009-05-24 19:44:21 +00:00
gdis
gerris - Update to 0.9.2 2009-01-14 09:12:31 +00:00
getdp - Update maintainer mail address 2009-04-05 20:50:49 +00:00
ghemical Fix build with gcc43. 2009-02-17 07:25:59 +00:00
ghmm
gnudatalanguage - Chase fftw3 update 2009-05-18 15:08:58 +00:00
gramps Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
gromacs - Update to 4.0.5 2009-06-06 22:53:25 +00:00
gsmc
gsystem
gtamsanalyzer - add LICENSE: 2009-01-16 17:22:52 +00:00
gwyddion - Chase fftw3 update 2009-05-18 15:08:58 +00:00
hdf - Fix shlib symlink 2009-01-15 22:33:30 +00:00
hdf5 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
hdf5-18 - Resolve LATEST_LINK conflict 2009-05-31 20:31:08 +00:00
ics Upgrade to 1.3.3. 2009-01-26 17:52:55 +00:00
InsightToolkit bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
isaac-cfd Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
jmol - Update to 11.6.17 2009-03-16 21:42:23 +00:00
kmovisto
kst Use my @FreeBSD.org email for the rest of my ports 2009-02-21 11:31:28 +00:00
kst2 Use my @FreeBSD.org email for the rest of my ports 2009-02-21 11:31:28 +00:00
lamprop - Allow to build with MAKE_JOBS_SAFE 2009-03-31 07:52:12 +00:00
libctl - Mark BROKEN on FreeBSD 6.x, does not compile 2009-03-02 21:36:12 +00:00
libghemical Fix build with gcc43. 2009-02-14 08:07:13 +00:00
libint Update to 1.1.4 2009-02-02 02:53:05 +00:00
liblinear - Update to 1.33 2008-12-22 15:49:16 +00:00
liboglappth - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
libsvm - Update to 2.89 2009-04-01 01:32:16 +00:00
libsvm-python
linsmith - Update to 0.99.12 2009-05-13 16:08:30 +00:00
mayavi
mbdyn Take over. 2009-05-29 03:31:23 +00:00
mcstas Release these ports into the wild due to maintainer-timeouts and no 2009-05-12 22:32:29 +00:00
medit - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
minc
minc2
mpb - Chase lang/guile shlib bump 2009-01-22 16:04:11 +00:00
mpqc Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
mpqc-mpich
ncs Fix plist with -DNOPORTDOCS. 2009-03-16 22:34:19 +00:00
netcdf - Fix Fortran linking 2009-03-22 22:09:27 +00:00
netcdf4 - Resolve LATEST_LINK conflict 2009-05-31 20:31:08 +00:00
netcdf-ftn - Fix Fortran linking 2009-03-22 22:09:27 +00:00
nifticlib - Update to 1.1.0 2009-04-30 22:43:54 +00:00
oases Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
omnetpp - Change default Tcl/Tk version to 8.5 2009-02-23 14:46:37 +00:00
openbabel Update to 2.2.1 2009-04-26 14:49:08 +00:00
openfoam - Chase readline update 2009-05-13 20:22:35 +00:00
ovt
p5-Algorithm-SVMLight - Update to 0.09 2009-06-05 22:56:07 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-PDB p5-Chemistry-File-PDB reads and writes PDB files. The PDB file format 2009-05-17 12:51:49 +00:00
p5-Chemistry-MacroMol Chemistry-MacroMol is a toolkit includes basic objects and methods to 2009-05-17 13:00:50 +00:00
p5-Chemistry-Mol Chemistr-Mol is a toolkit includes basic objects and methods to 2009-05-16 23:29:15 +00:00
p5-Geo-ReadGRIB - Update to 0.98 2009-03-23 21:51:29 +00:00
paje - add LICENSE: 2009-01-16 17:22:52 +00:00
paraview bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
pcp
pnetcdf Leverage USE_FORTRAN instead of accomplishing the same manually. 2009-01-18 20:17:31 +00:00
psi3 Update to 3.4.0. 2009-04-21 07:45:40 +00:00
psychopy - Update to 1.00.00 2009-05-10 18:36:41 +00:00
py-hcluster - Update to 0.2.0 2008-12-22 21:10:33 +00:00
py-mdp - Update to 2.4 2008-12-11 19:22:08 +00:00
py-mlpy - Update to 2.0.3 2009-06-05 21:59:04 +00:00
py-netCDF4 netCDF version 4 has many features not found in earlier versions of the 2009-02-23 20:18:45 +00:00
py-openbabel Update to 2.2.1 2009-04-26 14:49:08 +00:00
py-paida
py-pydicom pydicom is a pure python package for working with DICOM files. It was 2009-01-16 00:09:20 +00:00
py-scipy - Update to 0.7.0 2009-02-28 19:54:59 +00:00
pycdf
pyvox
qcl
ruby-dcl - update to 1.6.0 2009-01-08 17:11:08 +00:00
ruby-gphys - fix inappropriate use of NO* vars 2009-01-08 17:13:47 +00:00
ruby-netcdf
silo Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
simlib
svmlight - Update to 6.02 2009-04-11 20:37:01 +00:00
szip - Distfile rerolled with minor change to configure script 2009-01-30 22:25:07 +00:00
udunits - Mark MAKE_JOBS_UNSAFE, fails with forced jobs on my tinderbox 2009-06-09 14:30:23 +00:00
v_sim Upgrade to 3.4.4. 2009-06-05 19:25:23 +00:00
vis5d+ - Update maintainer mail address 2009-04-05 20:50:49 +00:00
vmd
x11iraf
xloops-ginac
xmakemol - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
xmds
Makefile Avogadro is an advanced molecular editor designed for cross-platform use in 2009-05-22 22:16:46 +00:00