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freebsd-ports/science
History
Thierry Thomas 492a38b30f Chase hdf5 upgrade and unbreak.
2016-04-29 17:42:02 +00:00
..
2d-rewriter Cleanup GH_* and variables order. 2015-12-29 14:30:46 +00:00
afni Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
avogadro Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
bddsolve many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
bft
bodr Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
brian Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
buddy
cdcl
cdf science/cdf: document ncurses requirement (USES+=ncurses) 2016-02-01 06:50:21 +00:00
cdo - Use USES=localbase 2016-04-23 06:46:51 +00:00
cgnslib - Update to 1.10.0 2016-04-20 20:42:39 +00:00
cgribex Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
checkmol Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
chemical-mime-data Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
chemtool Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
chemtool-devel Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
clhep science/clhep: Update version 2.2.0.8=>2.3.1.1 2016-04-10 21:01:55 +00:00
colt
crf++
dcl
devisor - Switch to options helpers 2015-09-24 21:19:27 +00:00
dlpoly-classic Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ecs - Update to 1.10.0 2016-04-20 20:42:39 +00:00
epte
fastcap
fasthenry
fisicalab Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvcom-mpi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
fvm - Update to 1.10.0 2016-04-20 20:42:39 +00:00
gchemutils Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
getdp Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ghemical Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
ghmm Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
gnudatalanguage Chase hdf5 upgrade and unbreak. 2016-04-29 17:42:02 +00:00
gramps Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
grib_api - Update to 1.14.7 2016-04-17 18:40:09 +00:00
gromacs Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
gsmc
gtamsanalyzer Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
gwyddion Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
h5utils - Update to 1.10.0 2016-04-20 20:42:39 +00:00
harminv Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
hdf many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
hdf5 - Fix build with 1.8.x installed 2016-04-23 06:46:55 +00:00
hs-bio
InsightToolkit Update to 4.9.1 2016-04-24 08:05:28 +00:00
isaac-cfd
jmol Mark a few ports BROKEN: unfetchable 2015-11-09 12:59:03 +00:00
jstrack Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
kalzium Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
kst2 Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
lamprop
libctl Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
libghemical Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
libint - Update to version 1.1.6 2015-10-24 17:55:23 +00:00
libkml - Resolve conflict with archivers/minizip: rename libminizip to libkmlminizip 2016-04-07 13:28:46 +00:00
liblinear science/liblinear: Update to version 2.1. 2016-03-09 16:44:37 +00:00
liboglappth Remove trailing whitespace from Makefiles, M-X. 2015-10-08 15:12:22 +00:00
libquantum Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
libsvm science/libsvm: Update to version 3.21. 2016-03-09 16:43:49 +00:00
libsvm-python
libxc Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
linsmith Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
massxpert Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mbdyn Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mcstas - Remove unneeded @dir's 2015-12-23 20:39:53 +00:00
mcstas-comps Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
medit Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
meep - Update to 1.10.0 2016-04-20 20:42:39 +00:00
mei Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
metaf2xml science/metaf2xml: update 1.57 -> 1.58 2016-01-04 13:49:17 +00:00
minc2 - Update to 1.10.0 2016-04-20 20:42:39 +00:00
mol2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mpb - Update to 1.10.0 2016-04-20 20:42:39 +00:00
mpqc Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
mpqc-mpich - Add missing manpage 2015-10-01 07:04:30 +00:00
ncs Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
netcdf - Update to 1.10.0 2016-04-20 20:42:39 +00:00
netcdf-cxx Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
netcdf-fortran Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
nifticlib - Update maintainer mail address 2015-12-11 08:48:56 +00:00
openbabel many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
openkim - Update maintainer mail address 2015-12-11 08:48:56 +00:00
orthanc many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
orthanc-dicomweb Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
orthanc-postgresql Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
orthanc-webviewer Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Algorithm-SVMLight Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-3DBuilder Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Bond-Find Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Canonicalize Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-Mopac Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-PDB Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SLN Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMARTS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-SMILES Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-VRML Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-File-XYZ Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-FormulaPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-InternalCoords Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-MidasPattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mok Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Mol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Pattern Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Reaction Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Chemistry-Ring Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-BUFR - Update to 1.33 2016-04-25 09:11:46 +00:00
p5-Geo-Coordinates-Converter Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-Coordinates-Converter-iArea Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Mcstas-Tools Don't leave dead symlinks when deinstalling. [1] (based on) 2016-04-14 10:40:38 +00:00
p5-PerlMol Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
p5-Physics-Unit Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
paje Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
paraview - Update to 1.10.0 2016-04-20 20:42:39 +00:00
pnetcdf Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
psychopy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pulseview Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-cdo Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-coards
py-DendroPy Update to 4.1.0 2016-04-07 20:30:11 +00:00
py-h5py - Update to 1.10.0 2016-04-20 20:42:39 +00:00
py-hcluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-mdp science/py-mdp: Update version 3.3=>3.5 2016-04-10 19:04:12 +00:00
py-mlpy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-netCDF4 - Update to 1.10.0 2016-04-20 20:42:39 +00:00
py-obspy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-paida Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-pupynere
py-pyaixi - Update to 1.0.4 2015-12-10 13:59:33 +00:00
py-pydicom
py-pysal - Update to 1.11.1 2016-04-09 12:30:11 +00:00
py-pyteomics Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-pyteomics.biolccc Rename my ports to comply with Python ports policy 2015-11-02 09:24:50 +00:00
py-scikit-fuzzy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scikit-learn Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scikit-sparse Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scimath Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-scipy Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
py-ws2300
pybrain Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pycdf Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
pynn - Update to 0.8.0 2015-12-11 00:44:01 +00:00
qcl Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk - Add new port: science/R-cran-cmprsk 2015-11-08 05:46:50 +00:00
R-cran-DCluster Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-e1071
R-cran-eco
R-cran-Epi Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
R-cran-epicalc
R-cran-etm - Add new port: science/R-cran-etm 2015-11-08 06:15:14 +00:00
R-cran-snow - Update to 0.4-1 2015-12-06 11:01:46 +00:00
R-cran-som
rubygem-ai4r Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-cdo Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-dcl Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
rubygem-ruby-netcdf Convert USES=gem:autoplist to USES=gem since autoplist is default 2016-04-27 21:57:31 +00:00
sigrok-cli Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
sigrok-firmware Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo - Update to 1.10.0 2016-04-20 20:42:39 +00:00
simlib many ports: mark broken on powerpc64 2016-04-21 16:43:14 +00:00
simsmith
step Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
svmlight
szip - Convert to new test framework 2015-10-01 15:56:21 +00:00
udunits Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
v_sim Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
veusz Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
vmd Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u. 2016-04-01 14:25:16 +00:00
voro++ - Update maintainer mail address 2015-12-11 08:48:56 +00:00
xfce4-equake-plugin
xmakemol
Makefile Remove expired ports: 2016-04-23 15:15:44 +00:00