| .. |
|
ariadne
|
6 ports categories: Remove $PTHREAD_LIBS
|
2015-03-24 16:01:21 +00:00 |
|
artemis
|
- Add empty directory to plist
|
2015-03-11 14:41:53 +00:00 |
|
avida
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
babel
|
Remove $FreeBSD$ from patches files in categories a-j.
|
2015-05-22 13:34:20 +00:00 |
|
biococoa
|
MASTER_SITES cleanup.
|
2015-05-14 10:15:04 +00:00 |
|
biojava
|
|
|
|
blat
|
Update to upstream version 36
|
2015-01-01 18:17:53 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
MASTER_SITES cleanup.
|
2015-05-14 10:15:04 +00:00 |
|
consed
|
${ENV} does not exist, it is called ${SETENV}.
|
2015-04-13 14:49:37 +00:00 |
|
crux
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
emboss
|
Fix packaging as a user (pkg already takes care of credentials)
|
2015-03-18 21:52:19 +00:00 |
|
fasta
|
|
|
|
fasta3
|
- Update to 36.3.7a
|
2015-05-07 02:33:57 +00:00 |
|
fastdnaml
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
fluctuate
|
Remove $FreeBSD$ from patches files in categories a-j.
|
2015-05-22 13:34:20 +00:00 |
|
garlic
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
gff2ps
|
|
|
|
gmap
|
|
|
|
gperiodic
|
|
|
|
grappa
|
|
|
|
hmmer
|
- Remove deprecated option
|
2015-04-02 15:41:31 +00:00 |
|
htslib
|
Update ports in the [bcd]* categories to not use GH_COMMIT.
|
2015-05-06 15:16:53 +00:00 |
|
iolib
|
- Update to 1.13.10
|
2015-03-04 13:17:46 +00:00 |
|
jalview
|
Remove $FreeBSD$ from patches files in categories a-j.
|
2015-05-22 13:34:20 +00:00 |
|
lagan
|
|
|
|
lamarc
|
|
|
|
libsbml
|
- Update to 5.11.4
|
2015-05-12 08:58:14 +00:00 |
|
linux-foldingathome
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
mafft
|
6 ports categories: Remove $PTHREAD_LIBS
|
2015-03-24 16:01:21 +00:00 |
|
mapm3
|
|
|
|
migrate
|
- Update to 3.6.9 and unbreak
|
2015-05-18 00:24:33 +00:00 |
|
molden
|
|
|
|
mopac
|
- Upadate biology/mopac to version 1.15
|
2014-12-16 22:10:23 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
muscle
|
|
|
|
ncbi-blast+
|
- Unbreak
|
2015-05-04 06:08:59 +00:00 |
|
ncbi-toolkit
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
|
njplot
|
Mark as broken unfetchable ports
|
2015-04-05 17:55:35 +00:00 |
|
ortep3
|
Mark as broken unfetchable ports
|
2015-04-05 17:55:35 +00:00 |
|
p5-AcePerl
|
Reassign biology/ perl modules to perl@.
|
2015-05-08 18:12:36 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
Reassign biology/ perl modules to perl@.
|
2015-05-08 18:12:36 +00:00 |
|
p5-Bio-Das
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Das-Lite
|
Remove TEST dependency on p5-Test-Simple when the version in core is
|
2015-02-26 16:54:41 +00:00 |
|
p5-Bio-GFF3
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Glite
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Graphics
|
Some OCD cleanups on some of the perl@ ports.
|
2015-03-12 23:00:02 +00:00 |
|
p5-Bio-MAGETAB
|
Some OCD cleanups on some of the perl@ ports.
|
2015-03-12 23:00:02 +00:00 |
|
p5-Bio-NEXUS
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-Bio-Phylo
|
- Update to 0.58
|
2014-12-07 04:41:47 +00:00 |
|
p5-Bio-SCF
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
|
p5-bioperl
|
Reassign biology/ perl modules to perl@.
|
2015-05-08 18:12:36 +00:00 |
|
p5-bioperl-run
|
For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to
|
2015-03-20 20:07:50 +00:00 |
|
paml
|
Update biology/paml to 4.8a and unbreak.
|
2015-04-10 15:39:01 +00:00 |
|
phrap
|
- Fix various distinfo errors
|
2014-10-16 08:55:30 +00:00 |
|
phred
|
|
|
|
phylip
|
- Update to version 3.696
|
2014-11-02 14:13:59 +00:00 |
|
phyml
|
Convert to USES=autoreconf
|
2014-12-28 19:14:13 +00:00 |
|
platon
|
biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak
|
2015-04-11 15:41:22 +00:00 |
|
plink
|
|
|
|
plinkseq
|
|
|
|
povchem
|
Remove $FreeBSD$ from patches files in categories a-j.
|
2015-05-22 13:34:20 +00:00 |
|
primer3
|
|
|
|
protomol
|
Cleanup DIST* variables.
|
2015-05-11 18:34:57 +00:00 |
|
psi88
|
|
|
|
py-biopython
|
biology/py-biopython:
|
2015-01-19 20:21:12 +00:00 |
|
pycogent
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
pyfasta
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
python-nexus
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
|
recombine
|
|
|
|
ruby-bio
|
biology/ruby-bio: mark broken with ruby 2.2
|
2015-04-03 13:50:38 +00:00 |
|
samtools
|
Update ports in the [bcd]* categories to not use GH_COMMIT.
|
2015-05-06 15:16:53 +00:00 |
|
seaview
|
biology/seaview: Update version 4.5.4=>4.5.4.4
|
2015-05-22 11:09:23 +00:00 |
|
seqan
|
biology/segan: Limit GCC to 4.8 while waiting for update
|
2015-03-21 11:53:27 +00:00 |
|
seqio
|
|
|
|
seqtools
|
biology/seqtools: 4.33 -> 4.34.1
|
2015-05-06 20:30:53 +00:00 |
|
sim4
|
|
|
|
ssaha
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
t_coffee
|
MASTER_SITES cleanup.
|
2015-05-14 10:15:04 +00:00 |
|
tinker
|
Remove $FreeBSD$ from patches files in categories a-j.
|
2015-05-22 13:34:20 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
|
|
|
tRNAscan-SE
|
|
|
|
ugene
|
Update Unipro UGENE to version 1.16.2.
|
2015-05-28 08:11:59 +00:00 |
|
velvet
|
Designatate 4 ports as unsafe for parallel building
|
2015-01-19 17:43:57 +00:00 |
|
wise
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
|
xmolwt
|
|
|
|
Makefile
|
Remove expired ports:
|
2015-01-01 01:13:11 +00:00 |
