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freebsd-ports/biology/p5-Bio-Phylo/Makefile
Aaron Dalton e25d96e450 - Updated from 0.07 to 0.12
Approved by:	tobez (implicit)

0.08 20/Feb/2006 15:14
                       Improved referential integrity between nodes,
                                taxa, and data.
                       Implemented Fastnexus parser
                       Node object silently implements Bio::Tree::NodeI
                       		interface if BioPerl is installed
                       Tree object silently implements Bio::Tree::TreeI
                       		interface if BioPerl is installed
                       Added convertor methods for XML and CIPRES
                       Implemented more Matrix methods
                       Implemented symbol tables in Bio::Phylo::Util::CONSTANT
                       Implemented visit method for listable objects
                       Implemented caching infrastructure for calculations
                       Changed object-model to inside-out arrays
                       Added Biodiversity measures code by Aki Mimoto
                       Moved constants and exceptions to Bio::Phylo::Util::*
                       Fixed memory leak due to circular references
2006-05-19 23:18:32 +00:00

66 lines
1.9 KiB
Makefile

# New ports collection makefile for: Bio-Phylo
# Date created: 12 Mar 2006
# Whom: Aaron Dalton <aaron@FreeBSD.org>
#
# $FreeBSD$
#
PORTNAME= Bio-Phylo
PORTVERSION= 0.12
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN}
MASTER_SITE_SUBDIR= Bio
PKGNAMEPREFIX= p5-
MAINTAINER= aaron@FreeBSD.org
COMMENT= Phylogenetic analysis using perl
BUILD_DEPENDS= ${SITE_PERL}/${PERL_ARCH}/Math/Random.pm:${PORTSDIR}/math/p5-Math-Random \
${SITE_PERL}/SVG.pm:${PORTSDIR}/textproc/p5-SVG \
${SITE_PERL}/Exception/Class.pm:${PORTSDIR}/devel/p5-Exception-Class \
${SITE_PERL}/${PERL_ARCH}/Scalar/Util.pm:${PORTSDIR}/lang/p5-Scalar-List-Utils \
${SITE_PERL}/IO/String.pm:${PORTSDIR}/devel/p5-IO-String \
${SITE_PERL}/XML/Simple.pm:${PORTSDIR}/textproc/p5-XML-Simple
RUN_DEPENDS= ${BUILD_DEPENDS}
MAN3= Bio::Phylo.3 \
Bio::Phylo::Forest.3 \
Bio::Phylo::Forest::Node.3 \
Bio::Phylo::Forest::Tree.3 \
Bio::Phylo::Generator.3 \
Bio::Phylo::IO.3 \
Bio::Phylo::Listable.3 \
Bio::Phylo::Manual.3 \
Bio::Phylo::Matrices.3 \
Bio::Phylo::Matrices::Alignment.3 \
Bio::Phylo::Matrices::Datum.3 \
Bio::Phylo::Matrices::Matrix.3 \
Bio::Phylo::Matrices::Sequence.3 \
Bio::Phylo::Parsers::Fastnewick.3 \
Bio::Phylo::Parsers::Fastnexus.3 \
Bio::Phylo::Parsers::Newick.3 \
Bio::Phylo::Parsers::Nexus.3 \
Bio::Phylo::Parsers::Table.3 \
Bio::Phylo::Parsers::Taxlist.3 \
Bio::Phylo::Taxa.3 \
Bio::Phylo::Taxa::Taxon.3 \
Bio::Phylo::Treedrawer.3 \
Bio::Phylo::Treedrawer::Svg.3 \
Bio::Phylo::Unparsers::Mrp.3 \
Bio::Phylo::Unparsers::Newick.3 \
Bio::Phylo::Unparsers::Nexus.3 \
Bio::Phylo::Unparsers::Pagel.3 \
Bio::Phylo::Util::CONSTANT.3 \
Bio::Phylo::Util::Exceptions.3 \
Bio::Phylo::Util::IDPool.3
PERL_CONFIGURE= yes
.include <bsd.port.pre.mk>
.if ${PERL_LEVEL} < 500800
IGNORE= requires at least Perl 5.8 due to dependencies. Please install lang/perl5.8 and try again
.endif
.include <bsd.port.post.mk>