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e25d96e450
Approved by: tobez (implicit) 0.08 20/Feb/2006 15:14 Improved referential integrity between nodes, taxa, and data. Implemented Fastnexus parser Node object silently implements Bio::Tree::NodeI interface if BioPerl is installed Tree object silently implements Bio::Tree::TreeI interface if BioPerl is installed Added convertor methods for XML and CIPRES Implemented more Matrix methods Implemented symbol tables in Bio::Phylo::Util::CONSTANT Implemented visit method for listable objects Implemented caching infrastructure for calculations Changed object-model to inside-out arrays Added Biodiversity measures code by Aki Mimoto Moved constants and exceptions to Bio::Phylo::Util::* Fixed memory leak due to circular references
66 lines
1.9 KiB
Makefile
66 lines
1.9 KiB
Makefile
# New ports collection makefile for: Bio-Phylo
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# Date created: 12 Mar 2006
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# Whom: Aaron Dalton <aaron@FreeBSD.org>
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#
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# $FreeBSD$
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#
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PORTNAME= Bio-Phylo
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PORTVERSION= 0.12
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CATEGORIES= biology perl5
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MASTER_SITES= ${MASTER_SITE_PERL_CPAN}
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MASTER_SITE_SUBDIR= Bio
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PKGNAMEPREFIX= p5-
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MAINTAINER= aaron@FreeBSD.org
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COMMENT= Phylogenetic analysis using perl
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BUILD_DEPENDS= ${SITE_PERL}/${PERL_ARCH}/Math/Random.pm:${PORTSDIR}/math/p5-Math-Random \
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${SITE_PERL}/SVG.pm:${PORTSDIR}/textproc/p5-SVG \
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${SITE_PERL}/Exception/Class.pm:${PORTSDIR}/devel/p5-Exception-Class \
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${SITE_PERL}/${PERL_ARCH}/Scalar/Util.pm:${PORTSDIR}/lang/p5-Scalar-List-Utils \
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${SITE_PERL}/IO/String.pm:${PORTSDIR}/devel/p5-IO-String \
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${SITE_PERL}/XML/Simple.pm:${PORTSDIR}/textproc/p5-XML-Simple
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RUN_DEPENDS= ${BUILD_DEPENDS}
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MAN3= Bio::Phylo.3 \
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Bio::Phylo::Forest.3 \
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Bio::Phylo::Forest::Node.3 \
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Bio::Phylo::Forest::Tree.3 \
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Bio::Phylo::Generator.3 \
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Bio::Phylo::IO.3 \
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Bio::Phylo::Listable.3 \
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Bio::Phylo::Manual.3 \
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Bio::Phylo::Matrices.3 \
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Bio::Phylo::Matrices::Alignment.3 \
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Bio::Phylo::Matrices::Datum.3 \
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Bio::Phylo::Matrices::Matrix.3 \
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Bio::Phylo::Matrices::Sequence.3 \
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Bio::Phylo::Parsers::Fastnewick.3 \
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Bio::Phylo::Parsers::Fastnexus.3 \
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Bio::Phylo::Parsers::Newick.3 \
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Bio::Phylo::Parsers::Nexus.3 \
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Bio::Phylo::Parsers::Table.3 \
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Bio::Phylo::Parsers::Taxlist.3 \
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Bio::Phylo::Taxa.3 \
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Bio::Phylo::Taxa::Taxon.3 \
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Bio::Phylo::Treedrawer.3 \
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Bio::Phylo::Treedrawer::Svg.3 \
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Bio::Phylo::Unparsers::Mrp.3 \
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Bio::Phylo::Unparsers::Newick.3 \
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Bio::Phylo::Unparsers::Nexus.3 \
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Bio::Phylo::Unparsers::Pagel.3 \
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Bio::Phylo::Util::CONSTANT.3 \
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Bio::Phylo::Util::Exceptions.3 \
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Bio::Phylo::Util::IDPool.3
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PERL_CONFIGURE= yes
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.include <bsd.port.pre.mk>
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.if ${PERL_LEVEL} < 500800
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IGNORE= requires at least Perl 5.8 due to dependencies. Please install lang/perl5.8 and try again
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.endif
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.include <bsd.port.post.mk>
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