mirror/freebsd-ports
1
0
Fork 0
mirror of https://git.FreeBSD.org/ports.git synced 2024-12-28 05:29:48 +00:00
Code Issues Releases Activity
942e4700fd
freebsd-ports/biology/emboss/pkg-plist
Johann Visagie cd4c80ae90 - Update to version 2.4.1 
- Unmark BROKEN
- Start adding support for Jemboss Java-based GUI (not active yet)

PR:		40198 ; many private requests
Submitted by:	Tilman Linneweh <tilman@arved.de> (2.4.1 update)
2002-07-05 10:09:32 +00:00

1681 lines
62 KiB
Plaintext
Raw Blame History

%%PLIST_EMNU%%bin/emnu
%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd
%%PLIST_HMMER%%bin/ealistat
%%PLIST_HMMER%%bin/ehmmalign
%%PLIST_HMMER%%bin/ehmmbuild
%%PLIST_HMMER%%bin/ehmmcalibrate
%%PLIST_HMMER%%bin/ehmmconvert
%%PLIST_HMMER%%bin/ehmmemit
%%PLIST_HMMER%%bin/ehmmfetch
%%PLIST_HMMER%%bin/ehmmindex
%%PLIST_HMMER%%bin/ehmmpfam
%%PLIST_HMMER%%bin/ehmmsearch
%%PLIST_HMMER%%lib/libhmmer.a
%%PLIST_HMMER%%lib/libhmmer.la
%%PLIST_HMMER%%lib/libhmmer.so
%%PLIST_HMMER%%lib/libhmmer.so.2
%%PLIST_HMMER%%share/EMBOSS/acd/ealistat.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmcalibrate.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmconvert.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmemit.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmfetch.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmindex.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmpfam.acd
%%PLIST_HMMER%%share/EMBOSS/acd/ehmmsearch.acd
%%PLIST_MEME%%bin/meme
%%PLIST_MEME%%lib/libmeme.a
%%PLIST_MEME%%lib/libmeme.la
%%PLIST_MEME%%lib/libmeme.so
%%PLIST_MEME%%lib/libmeme.so.2
%%PLIST_MEME%%share/EMBOSS/acd/meme.acd
%%PLIST_MSE%%bin/mse
%%PLIST_MSE%%lib/libckit.a
%%PLIST_MSE%%lib/libckit.la
%%PLIST_MSE%%lib/libckit.so
%%PLIST_MSE%%lib/libckit.so.1
%%PLIST_MSE%%share/EMBOSS/acd/mse.acd
%%PLIST_PHYLIP%%bin/eclique
%%PLIST_PHYLIP%%bin/econsense
%%PLIST_PHYLIP%%bin/econtml
%%PLIST_PHYLIP%%bin/econtrast
%%PLIST_PHYLIP%%bin/ednacomp
%%PLIST_PHYLIP%%bin/ednadist
%%PLIST_PHYLIP%%bin/ednainvar
%%PLIST_PHYLIP%%bin/ednaml
%%PLIST_PHYLIP%%bin/ednamlk
%%PLIST_PHYLIP%%bin/ednapars
%%PLIST_PHYLIP%%bin/ednapenny
%%PLIST_PHYLIP%%bin/edollop
%%PLIST_PHYLIP%%bin/edolpenny
%%PLIST_PHYLIP%%bin/efactor
%%PLIST_PHYLIP%%bin/efitch
%%PLIST_PHYLIP%%bin/egendist
%%PLIST_PHYLIP%%bin/ekitsch
%%PLIST_PHYLIP%%bin/emix
%%PLIST_PHYLIP%%bin/eneighbor
%%PLIST_PHYLIP%%bin/epenny
%%PLIST_PHYLIP%%bin/eprotdist
%%PLIST_PHYLIP%%bin/eprotpars
%%PLIST_PHYLIP%%bin/erestml
%%PLIST_PHYLIP%%bin/eseqboot
%%PLIST_PHYLIP%%share/EMBOSS/acd/eclique.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/econsense.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/econtml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/econtrast.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednacomp.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednadist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednainvar.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednaml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednamlk.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/edollop.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/edolpenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/efactor.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/efitch.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/egendist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/ekitsch.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/emix.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eneighbor.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/epenny.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eprotdist.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eprotpars.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/erestml.acd
%%PLIST_PHYLIP%%share/EMBOSS/acd/eseqboot.acd
%%PLIST_TOPO%%bin/topo
%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd
bin/abiview
bin/acdc
bin/alignwrap
bin/antigenic
bin/backtranseq
bin/banana
bin/biosed
bin/btwisted
bin/cai
bin/chaos
bin/charge
bin/checktrans
bin/chips
bin/cirdna
bin/codcmp
bin/coderet
bin/compseq
bin/cons
bin/contacts
bin/cpgplot
bin/cpgreport
bin/cusp
bin/cutgextract
bin/cutseq
bin/dan
bin/dbiblast
bin/dbifasta
bin/dbiflat
bin/dbigcg
bin/degapseq
bin/descseq
bin/dichet
bin/diffseq
bin/digest
bin/distmat
bin/domainer
bin/dotmatcher
bin/dotpath
bin/dottup
bin/dreg
bin/einverted
bin/embossdata
bin/embossversion
bin/emma
bin/emowse
bin/entret
bin/equicktandem
bin/est2genome
bin/etandem
bin/extractfeat
bin/extractseq
bin/findkm
bin/freak
bin/fuzznuc
bin/fuzzpro
bin/fuzztran
bin/garnier
bin/geecee
bin/getorf
bin/helixturnhelix
bin/hmoment
bin/iep
bin/infoalign
bin/infoseq
bin/isochore
bin/lindna
bin/listor
bin/marscan
bin/maskfeat
bin/maskseq
bin/matcher
bin/megamerger
bin/merger
bin/msbar
bin/mwfilter
bin/needle
bin/newcpgreport
bin/newcpgseek
bin/newseq
bin/noreturn
bin/notseq
bin/nrscope
bin/nthseq
bin/octanol
bin/oddcomp
bin/palindrome
bin/pasteseq
bin/patmatdb
bin/patmatmotifs
bin/pepcoil
bin/pepinfo
bin/pepnet
bin/pepstats
bin/pepwheel
bin/pepwindow
bin/pepwindowall
bin/plotcon
bin/plotorf
bin/polydot
bin/preg
bin/prettyplot
bin/prettyseq
bin/primersearch
bin/printsextract
bin/profit
bin/prophecy
bin/prophet
bin/prosextract
bin/pscan
bin/psiblasts
bin/rebaseextract
bin/recoder
bin/redata
bin/remap
bin/restover
bin/restrict
bin/revseq
bin/runJemboss.csh
bin/scopalign
bin/scope
bin/seealso
bin/seqmatchall
bin/seqret
bin/seqretsplit
bin/showalign
bin/showdb
bin/showfeat
bin/showorf
bin/showseq
bin/shuffleseq
bin/sigcleave
bin/siggen
bin/sigscan
bin/silent
bin/splitter
bin/stretcher
bin/stssearch
bin/supermatcher
bin/swissparse
bin/syco
bin/textsearch
bin/tfextract
bin/tfm
bin/tfscan
bin/tmap
bin/transeq
bin/trimest
bin/trimseq
bin/vectorstrip
bin/water
bin/wobble
bin/wordcount
bin/wordmatch
bin/wossname
etc/emboss.default.sample
lib/libajax.a
lib/libajax.la
lib/libajax.so
lib/libajax.so.1
lib/libajaxg.a
lib/libajaxg.la
lib/libajaxg.so
lib/libajaxg.so.1
lib/libnucleus.a
lib/libnucleus.la
lib/libnucleus.so
lib/libnucleus.so.1
lib/libplplot.a
lib/libplplot.la
lib/libplplot.so
lib/libplplot.so.5
share/EMBOSS/acd/abiview.acd
share/EMBOSS/acd/ajbad.acd
share/EMBOSS/acd/ajfeatest.acd
share/EMBOSS/acd/ajtest.acd
share/EMBOSS/acd/alignwrap.acd
share/EMBOSS/acd/antigenic.acd
share/EMBOSS/acd/backtranseq.acd
share/EMBOSS/acd/banana.acd
share/EMBOSS/acd/biosed.acd
share/EMBOSS/acd/btwisted.acd
share/EMBOSS/acd/cai.acd
share/EMBOSS/acd/chaos.acd
share/EMBOSS/acd/charge.acd
share/EMBOSS/acd/checktrans.acd
share/EMBOSS/acd/chips.acd
share/EMBOSS/acd/cirdna.acd
share/EMBOSS/acd/codcmp.acd
share/EMBOSS/acd/coderet.acd
share/EMBOSS/acd/codes.english
share/EMBOSS/acd/complex.acd
share/EMBOSS/acd/compseq.acd
share/EMBOSS/acd/cons.acd
share/EMBOSS/acd/contacts.acd
share/EMBOSS/acd/corbatest.acd
share/EMBOSS/acd/cpgplot.acd
share/EMBOSS/acd/cpgreport.acd
share/EMBOSS/acd/cusp.acd
share/EMBOSS/acd/cutgextract.acd
share/EMBOSS/acd/cutseq.acd
share/EMBOSS/acd/dan.acd
share/EMBOSS/acd/dbiblast.acd
share/EMBOSS/acd/dbifasta.acd
share/EMBOSS/acd/dbiflat.acd
share/EMBOSS/acd/dbigcg.acd
share/EMBOSS/acd/degapseq.acd
share/EMBOSS/acd/demoalign.acd
share/EMBOSS/acd/demofeatures.acd
share/EMBOSS/acd/demolist.acd
share/EMBOSS/acd/demoreport.acd
share/EMBOSS/acd/demosequence.acd
share/EMBOSS/acd/demostring.acd
share/EMBOSS/acd/demotable.acd
share/EMBOSS/acd/descseq.acd
share/EMBOSS/acd/dichet.acd
share/EMBOSS/acd/diffseq.acd
share/EMBOSS/acd/digest.acd
share/EMBOSS/acd/distmat.acd
share/EMBOSS/acd/domainer.acd
share/EMBOSS/acd/dotmatcher.acd
share/EMBOSS/acd/dotpath.acd
share/EMBOSS/acd/dottup.acd
share/EMBOSS/acd/dreg.acd
share/EMBOSS/acd/einverted.acd
share/EMBOSS/acd/embossdata.acd
share/EMBOSS/acd/embossversion.acd
share/EMBOSS/acd/emma.acd
share/EMBOSS/acd/emowse.acd
share/EMBOSS/acd/entrails.acd
share/EMBOSS/acd/entret.acd
share/EMBOSS/acd/eprimer3.acd
share/EMBOSS/acd/equicktandem.acd
share/EMBOSS/acd/est2genome.acd
share/EMBOSS/acd/etandem.acd
share/EMBOSS/acd/extractfeat.acd
share/EMBOSS/acd/extractseq.acd
share/EMBOSS/acd/findkm.acd
share/EMBOSS/acd/freak.acd
share/EMBOSS/acd/fuzznuc.acd
share/EMBOSS/acd/fuzzpro.acd
share/EMBOSS/acd/fuzztran.acd
share/EMBOSS/acd/garnier.acd
share/EMBOSS/acd/geecee.acd
share/EMBOSS/acd/getorf.acd
share/EMBOSS/acd/helixturnhelix.acd
share/EMBOSS/acd/histogramtest.acd
share/EMBOSS/acd/hmoment.acd
share/EMBOSS/acd/iep.acd
share/EMBOSS/acd/infoalign.acd
share/EMBOSS/acd/infoseq.acd
share/EMBOSS/acd/interface.acd
share/EMBOSS/acd/isochore.acd
share/EMBOSS/acd/lindna.acd
share/EMBOSS/acd/listor.acd
share/EMBOSS/acd/marscan.acd
share/EMBOSS/acd/maskfeat.acd
share/EMBOSS/acd/maskseq.acd
share/EMBOSS/acd/matcher.acd
share/EMBOSS/acd/megamerger.acd
share/EMBOSS/acd/merger.acd
share/EMBOSS/acd/msbar.acd
share/EMBOSS/acd/mwfilter.acd
share/EMBOSS/acd/needle.acd
share/EMBOSS/acd/newcpgreport.acd
share/EMBOSS/acd/newcpgseek.acd
share/EMBOSS/acd/newseq.acd
share/EMBOSS/acd/noreturn.acd
share/EMBOSS/acd/notseq.acd
share/EMBOSS/acd/nrscope.acd
share/EMBOSS/acd/nthseq.acd
share/EMBOSS/acd/octanol.acd
share/EMBOSS/acd/oddcomp.acd
share/EMBOSS/acd/palindrome.acd
share/EMBOSS/acd/pasteseq.acd
share/EMBOSS/acd/patmatdb.acd
share/EMBOSS/acd/patmatmotifs.acd
share/EMBOSS/acd/patmattest.acd
share/EMBOSS/acd/pdbtosp.acd
share/EMBOSS/acd/pepcoil.acd
share/EMBOSS/acd/pepinfo.acd
share/EMBOSS/acd/pepnet.acd
share/EMBOSS/acd/pepstats.acd
share/EMBOSS/acd/pepwheel.acd
share/EMBOSS/acd/pepwindow.acd
share/EMBOSS/acd/pepwindowall.acd
share/EMBOSS/acd/plotcon.acd
share/EMBOSS/acd/plotorf.acd
share/EMBOSS/acd/polydot.acd
share/EMBOSS/acd/preg.acd
share/EMBOSS/acd/prettyplot.acd
share/EMBOSS/acd/prettyseq.acd
share/EMBOSS/acd/prima.acd
share/EMBOSS/acd/primers.acd
share/EMBOSS/acd/primersearch.acd
share/EMBOSS/acd/printsextract.acd
share/EMBOSS/acd/profit.acd
share/EMBOSS/acd/prophecy.acd
share/EMBOSS/acd/prophet.acd
share/EMBOSS/acd/prosextract.acd
share/EMBOSS/acd/pscan.acd
share/EMBOSS/acd/psiblasts.acd
share/EMBOSS/acd/rebaseextract.acd
share/EMBOSS/acd/recoder.acd
share/EMBOSS/acd/redata.acd
share/EMBOSS/acd/remap.acd
share/EMBOSS/acd/restover.acd
share/EMBOSS/acd/restrict.acd
share/EMBOSS/acd/revseq.acd
share/EMBOSS/acd/scopalign.acd
share/EMBOSS/acd/scopparse.acd
share/EMBOSS/acd/scope.acd
share/EMBOSS/acd/seealso.acd
share/EMBOSS/acd/seqinfo.acd
share/EMBOSS/acd/seqmatchall.acd
share/EMBOSS/acd/seqnr.acd
share/EMBOSS/acd/seqret.acd
share/EMBOSS/acd/seqretall.acd
share/EMBOSS/acd/seqretallfeat.acd
share/EMBOSS/acd/seqretset.acd
share/EMBOSS/acd/seqretsingle.acd
share/EMBOSS/acd/seqretsplit.acd
share/EMBOSS/acd/seqsort.acd
share/EMBOSS/acd/showalign.acd
share/EMBOSS/acd/showdb.acd
share/EMBOSS/acd/showfeat.acd
share/EMBOSS/acd/showorf.acd
share/EMBOSS/acd/showseq.acd
share/EMBOSS/acd/shuffleseq.acd
share/EMBOSS/acd/sigcleave.acd
share/EMBOSS/acd/siggen.acd
share/EMBOSS/acd/sigscan.acd
share/EMBOSS/acd/silent.acd
share/EMBOSS/acd/splitter.acd
share/EMBOSS/acd/stretcher.acd
share/EMBOSS/acd/stssearch.acd
share/EMBOSS/acd/supermatcher.acd
share/EMBOSS/acd/swissparse.acd
share/EMBOSS/acd/syco.acd
share/EMBOSS/acd/testplot.acd
share/EMBOSS/acd/textsearch.acd
share/EMBOSS/acd/tfextract.acd
share/EMBOSS/acd/tfm.acd
share/EMBOSS/acd/tfscan.acd
share/EMBOSS/acd/tmap.acd
share/EMBOSS/acd/tranalign.acd
share/EMBOSS/acd/transeq.acd
share/EMBOSS/acd/treetypedisplay.acd
share/EMBOSS/acd/trimest.acd
share/EMBOSS/acd/trimseq.acd
share/EMBOSS/acd/union.acd
share/EMBOSS/acd/vectorstrip.acd
share/EMBOSS/acd/water.acd
share/EMBOSS/acd/whichdb.acd
share/EMBOSS/acd/wobble.acd
share/EMBOSS/acd/wordcount.acd
share/EMBOSS/acd/wordmatch.acd
share/EMBOSS/acd/wossname.acd
share/EMBOSS/acd/yank.acd
share/EMBOSS/data/CODONS/Eacc.cut
share/EMBOSS/data/CODONS/Eadenovirus5.cut
share/EMBOSS/data/CODONS/Eadenovirus7.cut
share/EMBOSS/data/CODONS/Eaidlav.cut
share/EMBOSS/data/CODONS/Eanasp.cut
share/EMBOSS/data/CODONS/Eani.cut
share/EMBOSS/data/CODONS/Eani_h.cut
share/EMBOSS/data/CODONS/Eanidmit.cut
share/EMBOSS/data/CODONS/Easn.cut
share/EMBOSS/data/CODONS/Eath.cut
share/EMBOSS/data/CODONS/Eatu.cut
share/EMBOSS/data/CODONS/Eavi.cut
share/EMBOSS/data/CODONS/Ebja.cut
share/EMBOSS/data/CODONS/Ebly.cut
share/EMBOSS/data/CODONS/Ebme.cut
share/EMBOSS/data/CODONS/Ebmo.cut
share/EMBOSS/data/CODONS/Ebna.cut
share/EMBOSS/data/CODONS/Ebov.cut
share/EMBOSS/data/CODONS/Ebovsp.cut
share/EMBOSS/data/CODONS/Ebst.cut
share/EMBOSS/data/CODONS/Ebsu.cut
share/EMBOSS/data/CODONS/Ebsu_h.cut
share/EMBOSS/data/CODONS/Ecac.cut
share/EMBOSS/data/CODONS/Ecal.cut
share/EMBOSS/data/CODONS/Eccr.cut
share/EMBOSS/data/CODONS/Ecel.cut
share/EMBOSS/data/CODONS/Echi.cut
share/EMBOSS/data/CODONS/Echicken.cut
share/EMBOSS/data/CODONS/Echisp.cut
share/EMBOSS/data/CODONS/Echk.cut
share/EMBOSS/data/CODONS/Echmp.cut
share/EMBOSS/data/CODONS/Echnt.cut
share/EMBOSS/data/CODONS/Echos.cut
share/EMBOSS/data/CODONS/Echzm.cut
share/EMBOSS/data/CODONS/Echzmrubp.cut
share/EMBOSS/data/CODONS/Ecpx.cut
share/EMBOSS/data/CODONS/Ecre.cut
share/EMBOSS/data/CODONS/Ecrisp.cut
share/EMBOSS/data/CODONS/Ectr.cut
share/EMBOSS/data/CODONS/Edayhoff.cut
share/EMBOSS/data/CODONS/Eddi.cut
share/EMBOSS/data/CODONS/Eddi_h.cut
share/EMBOSS/data/CODONS/Edog.cut
share/EMBOSS/data/CODONS/Edro.cut
share/EMBOSS/data/CODONS/Edro_h.cut
share/EMBOSS/data/CODONS/Edrosophila.cut
share/EMBOSS/data/CODONS/Eeca.cut
share/EMBOSS/data/CODONS/Eeco.cut
share/EMBOSS/data/CODONS/Eeco_h.cut
share/EMBOSS/data/CODONS/Eecoli.cut
share/EMBOSS/data/CODONS/Ef1.cut
share/EMBOSS/data/CODONS/Efish.cut
share/EMBOSS/data/CODONS/Efmdvpolyp.cut
share/EMBOSS/data/CODONS/Eham.cut
share/EMBOSS/data/CODONS/Ehha.cut
share/EMBOSS/data/CODONS/Ehin.cut
share/EMBOSS/data/CODONS/Ehma.cut
share/EMBOSS/data/CODONS/Ehum.cut
share/EMBOSS/data/CODONS/Ehuman.cut
share/EMBOSS/data/CODONS/Ekla.cut
share/EMBOSS/data/CODONS/Ekpn.cut
share/EMBOSS/data/CODONS/Ella.cut
share/EMBOSS/data/CODONS/Emac.cut
share/EMBOSS/data/CODONS/Emaize.cut
share/EMBOSS/data/CODONS/Emam_h.cut
share/EMBOSS/data/CODONS/Emixlg.cut
share/EMBOSS/data/CODONS/Emouse.cut
share/EMBOSS/data/CODONS/Emsa.cut
share/EMBOSS/data/CODONS/Emse.cut
share/EMBOSS/data/CODONS/Emta.cut
share/EMBOSS/data/CODONS/Emtu.cut
share/EMBOSS/data/CODONS/Emus.cut
share/EMBOSS/data/CODONS/Emussp.cut
share/EMBOSS/data/CODONS/Emva.cut
share/EMBOSS/data/CODONS/Emze.cut
share/EMBOSS/data/CODONS/Emzecp.cut
share/EMBOSS/data/CODONS/Encr.cut
share/EMBOSS/data/CODONS/Eneu.cut
share/EMBOSS/data/CODONS/Engo.cut
share/EMBOSS/data/CODONS/Eoncsp.cut
share/EMBOSS/data/CODONS/Epae.cut
share/EMBOSS/data/CODONS/Epea.cut
share/EMBOSS/data/CODONS/Epet.cut
share/EMBOSS/data/CODONS/Epfa.cut
share/EMBOSS/data/CODONS/Ephix174.cut
share/EMBOSS/data/CODONS/Ephv.cut
share/EMBOSS/data/CODONS/Ephy.cut
share/EMBOSS/data/CODONS/Epig.cut
share/EMBOSS/data/CODONS/Epolyomaa2.cut
share/EMBOSS/data/CODONS/Epombe.cut
share/EMBOSS/data/CODONS/Epombecai.cut
share/EMBOSS/data/CODONS/Epot.cut
share/EMBOSS/data/CODONS/Eppu.cut
share/EMBOSS/data/CODONS/Epse.cut
share/EMBOSS/data/CODONS/Epsy.cut
share/EMBOSS/data/CODONS/Epvu.cut
share/EMBOSS/data/CODONS/Erab.cut
share/EMBOSS/data/CODONS/Erabbit.cut
share/EMBOSS/data/CODONS/Erabsp.cut
share/EMBOSS/data/CODONS/Erat.cut
share/EMBOSS/data/CODONS/Eratsp.cut
share/EMBOSS/data/CODONS/Erca.cut
share/EMBOSS/data/CODONS/Erhm.cut
share/EMBOSS/data/CODONS/Eric.cut
share/EMBOSS/data/CODONS/Erle.cut
share/EMBOSS/data/CODONS/Erme.cut
share/EMBOSS/data/CODONS/Ersp.cut
share/EMBOSS/data/CODONS/Esalsp.cut
share/EMBOSS/data/CODONS/Esau.cut
share/EMBOSS/data/CODONS/Esco.cut
share/EMBOSS/data/CODONS/Esgi.cut
share/EMBOSS/data/CODONS/Eshp.cut
share/EMBOSS/data/CODONS/Eshpsp.cut
share/EMBOSS/data/CODONS/Esli.cut
share/EMBOSS/data/CODONS/Eslm.cut
share/EMBOSS/data/CODONS/Esma.cut
share/EMBOSS/data/CODONS/Esmi.cut
share/EMBOSS/data/CODONS/Esmu.cut
share/EMBOSS/data/CODONS/Esoy.cut
share/EMBOSS/data/CODONS/Espi.cut
share/EMBOSS/data/CODONS/Espn.cut
share/EMBOSS/data/CODONS/Espo.cut
share/EMBOSS/data/CODONS/Espo_h.cut
share/EMBOSS/data/CODONS/Espu.cut
share/EMBOSS/data/CODONS/Esta.cut
share/EMBOSS/data/CODONS/Esty.cut
share/EMBOSS/data/CODONS/Esus.cut
share/EMBOSS/data/CODONS/Esv40.cut
share/EMBOSS/data/CODONS/Esyhsp.cut
share/EMBOSS/data/CODONS/Esynsp.cut
share/EMBOSS/data/CODONS/Etbr.cut
share/EMBOSS/data/CODONS/Etcr.cut
share/EMBOSS/data/CODONS/Eter.cut
share/EMBOSS/data/CODONS/Etetsp.cut
share/EMBOSS/data/CODONS/Etob.cut
share/EMBOSS/data/CODONS/Etobcp.cut
share/EMBOSS/data/CODONS/Etom.cut
share/EMBOSS/data/CODONS/Etrb.cut
share/EMBOSS/data/CODONS/Evco.cut
share/EMBOSS/data/CODONS/Ewht.cut
share/EMBOSS/data/CODONS/Exel.cut
share/EMBOSS/data/CODONS/Exenopus.cut
share/EMBOSS/data/CODONS/Eyeast.cut
share/EMBOSS/data/CODONS/Eyeastcai.cut
share/EMBOSS/data/CODONS/Eyen.cut
share/EMBOSS/data/CODONS/Eysc.cut
share/EMBOSS/data/CODONS/Eysc_h.cut
share/EMBOSS/data/CODONS/Eyscmt.cut
share/EMBOSS/data/CODONS/Eysp.cut
share/EMBOSS/data/CODONS/Ezebrafish.cut
share/EMBOSS/data/CODONS/Ezma.cut
share/EMBOSS/data/EBLOSUM30
share/EMBOSS/data/EBLOSUM35
share/EMBOSS/data/EBLOSUM40
share/EMBOSS/data/EBLOSUM45
share/EMBOSS/data/EBLOSUM50
share/EMBOSS/data/EBLOSUM55
share/EMBOSS/data/EBLOSUM60
share/EMBOSS/data/EBLOSUM62
share/EMBOSS/data/EBLOSUM62-12
share/EMBOSS/data/EBLOSUM65
share/EMBOSS/data/EBLOSUM70
share/EMBOSS/data/EBLOSUM75
share/EMBOSS/data/EBLOSUM80
share/EMBOSS/data/EBLOSUM85
share/EMBOSS/data/EBLOSUM90
share/EMBOSS/data/EBLOSUMN
share/EMBOSS/data/EDNAFULL
share/EMBOSS/data/EDNAMAT
share/EMBOSS/data/EGC.0
share/EMBOSS/data/EGC.1
share/EMBOSS/data/EGC.10
share/EMBOSS/data/EGC.11
share/EMBOSS/data/EGC.12
share/EMBOSS/data/EGC.13
share/EMBOSS/data/EGC.14
share/EMBOSS/data/EGC.15
share/EMBOSS/data/EGC.16
share/EMBOSS/data/EGC.2
share/EMBOSS/data/EGC.21
share/EMBOSS/data/EGC.22
share/EMBOSS/data/EGC.23
share/EMBOSS/data/EGC.3
share/EMBOSS/data/EGC.4
share/EMBOSS/data/EGC.5
share/EMBOSS/data/EGC.6
share/EMBOSS/data/EGC.9
share/EMBOSS/data/ENUC.4.2
share/EMBOSS/data/ENUC.4.4
share/EMBOSS/data/EPAM10
share/EMBOSS/data/EPAM100
share/EMBOSS/data/EPAM110
share/EMBOSS/data/EPAM120
share/EMBOSS/data/EPAM130
share/EMBOSS/data/EPAM140
share/EMBOSS/data/EPAM150
share/EMBOSS/data/EPAM160
share/EMBOSS/data/EPAM170
share/EMBOSS/data/EPAM180
share/EMBOSS/data/EPAM190
share/EMBOSS/data/EPAM20
share/EMBOSS/data/EPAM200
share/EMBOSS/data/EPAM210
share/EMBOSS/data/EPAM220
share/EMBOSS/data/EPAM230
share/EMBOSS/data/EPAM240
share/EMBOSS/data/EPAM250
share/EMBOSS/data/EPAM260
share/EMBOSS/data/EPAM270
share/EMBOSS/data/EPAM280
share/EMBOSS/data/EPAM290
share/EMBOSS/data/EPAM30
share/EMBOSS/data/EPAM300
share/EMBOSS/data/EPAM310
share/EMBOSS/data/EPAM320
share/EMBOSS/data/EPAM330
share/EMBOSS/data/EPAM340
share/EMBOSS/data/EPAM350
share/EMBOSS/data/EPAM360
share/EMBOSS/data/EPAM370
share/EMBOSS/data/EPAM380
share/EMBOSS/data/EPAM390
share/EMBOSS/data/EPAM40
share/EMBOSS/data/EPAM400
share/EMBOSS/data/EPAM410
share/EMBOSS/data/EPAM420
share/EMBOSS/data/EPAM430
share/EMBOSS/data/EPAM440
share/EMBOSS/data/EPAM450
share/EMBOSS/data/EPAM460
share/EMBOSS/data/EPAM470
share/EMBOSS/data/EPAM480
share/EMBOSS/data/EPAM490
share/EMBOSS/data/EPAM50
share/EMBOSS/data/EPAM500
share/EMBOSS/data/EPAM60
share/EMBOSS/data/EPAM70
share/EMBOSS/data/EPAM80
share/EMBOSS/data/EPAM90
share/EMBOSS/data/Eaa_acc_surface.dat
share/EMBOSS/data/Eaa_hydropathy.dat
share/EMBOSS/data/Eaa_properties.dat
share/EMBOSS/data/Eamino.dat
share/EMBOSS/data/Eangles.dat
share/EMBOSS/data/Eangles_tri.dat
share/EMBOSS/data/Eantigenic.dat
share/EMBOSS/data/Ebases.iub
share/EMBOSS/data/Edayhoff.freq
share/EMBOSS/data/Edna.melt
share/EMBOSS/data/Eembl.ior
share/EMBOSS/data/Eenergy.dat
share/EMBOSS/data/Efeatures.embl
share/EMBOSS/data/Efeatures.emboss
share/EMBOSS/data/Efeatures.gff
share/EMBOSS/data/Efeatures.pir
share/EMBOSS/data/Efeatures.protein
share/EMBOSS/data/Efeatures.swiss
share/EMBOSS/data/Efreqs.dat
share/EMBOSS/data/Ehth.dat
share/EMBOSS/data/Ehth87.dat
share/EMBOSS/data/Ememe.dat
share/EMBOSS/data/Enakai.dat
share/EMBOSS/data/Epepcoil.dat
share/EMBOSS/data/Epk.dat
share/EMBOSS/data/Epprofile
share/EMBOSS/data/Eprior1.plib
share/EMBOSS/data/Eprior30.plib
share/EMBOSS/data/Erna.melt
share/EMBOSS/data/Esig.euk
share/EMBOSS/data/Esig.pro
share/EMBOSS/data/Etags.embl
share/EMBOSS/data/Etags.emboss
share/EMBOSS/data/Etags.gff
share/EMBOSS/data/Etags.pir
share/EMBOSS/data/Etags.protein
share/EMBOSS/data/Etags.swiss
share/EMBOSS/data/Ewhite-wimley.dat
share/EMBOSS/data/PRINTS/dummyfile
share/EMBOSS/data/PROSITE/dummyfile
share/EMBOSS/data/REBASE/dummyfile
share/EMBOSS/data/embossre.equ
share/EMBOSS/emboss.default.template
share/EMBOSS/jemboss/README
share/EMBOSS/jemboss/LICENSE
share/EMBOSS/jemboss/api/allclasses-frame.html
share/EMBOSS/jemboss/api/deprecated-list.html
share/EMBOSS/jemboss/api/getClasses.pl
share/EMBOSS/jemboss/api/help-doc.html
share/EMBOSS/jemboss/api/index-all.html
share/EMBOSS/jemboss/api/index.html
share/EMBOSS/jemboss/api/makeDocs.csh
share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/Jemboss.winExit.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossLogo.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/JembossParams.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/BuildProgramMenu.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ResultsMenuBar.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SetUpMenuBar.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowResultSet.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/ShowSavedResults.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/SwingWorker.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/DragTree.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.PopupListener.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileEditorDisplay.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileNode.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree/FileSaving.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/BuildJembossForm.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/ListFilePanel.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SectionPanel.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetInFileCard.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/SetOutFileCard.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.DecimalNumberDocument.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldFloat.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.WholeNumberDocument.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldInt.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/TextFieldSink.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/myComboPopup.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form/myComboPopup.myComboUI.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/FileChooser.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Database.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.HorizontalMenu.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/ProgList.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup/Splash.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdFunResolve.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/AcdVarResolve.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Ajax.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/Dependent.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/ParseAcd.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/Application.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationFields.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd/ApplicationParam.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/JembossProcess.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ListFile.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/ResultList.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/programs/RunEmbossApplication.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/AuthPopup.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/CallAjax.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/GetWossname.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossRun.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/JembossSoapException.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PendingResults.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/PrivateRequest.html
share/EMBOSS/jemboss/api/org/emboss/jemboss/soap/ResListView.html
share/EMBOSS/jemboss/api/overview-tree.html
share/EMBOSS/jemboss/api/package-list
share/EMBOSS/jemboss/api/packages.html
share/EMBOSS/jemboss/api/serialized-form.html
share/EMBOSS/jemboss/api/stylesheet.css
share/EMBOSS/jemboss/images/Backward_arrow_button.gif
share/EMBOSS/jemboss/images/Forward_arrow_button.gif
share/EMBOSS/jemboss/images/Go_button.gif
share/EMBOSS/jemboss/images/Information_button.gif
share/EMBOSS/jemboss/images/Jemboss_logo_greyback.gif
share/EMBOSS/jemboss/images/Jemboss_logo_large.gif
share/EMBOSS/jemboss/images/Jemboss_logo_small.gif
share/EMBOSS/jemboss/images/Job_manager_button.gif
share/EMBOSS/jemboss/images/Refresh_button.gif
share/EMBOSS/jemboss/images/Refresh_button2.gif
share/EMBOSS/jemboss/lib/README
share/EMBOSS/jemboss/lib/activation.jar
share/EMBOSS/jemboss/lib/jakarta-regexp-1.2.jar
share/EMBOSS/jemboss/lib/jalview.jar
share/EMBOSS/jemboss/lib/mail.jar
share/EMBOSS/jemboss/lib/soap.jar
share/EMBOSS/jemboss/lib/xerces.jar
share/EMBOSS/jemboss/lib/jcert.jar
share/EMBOSS/jemboss/lib/jnet.jar
share/EMBOSS/jemboss/lib/jsse.jar
share/EMBOSS/jemboss/org/emboss/jemboss/Jemboss.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossLogo.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossParams.java
share/EMBOSS/jemboss/org/emboss/jemboss/JembossJarUtil.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/AdvancedOptions.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/BuildProgramMenu.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/LaunchJalView.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ResultsMenuBar.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SetUpMenuBar.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ShowResultSet.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/ShowSavedResults.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SwingWorker.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SequenceData.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/SequenceList.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/MemoryComboBox.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/DragTree.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileEditorDisplay.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileNode.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileSave.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/FileSaving.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteDragTree.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileNode.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree/RemoteFileTreePanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/ListFilePanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/MultiLineToolTipUI.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/PlafMacros.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SectionPanel.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/Separator.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SetInFileCard.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/SetOutFileCard.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldFloat.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldInt.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/TextFieldSink.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/form/myComboPopup.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/CutNPasteTextArea.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/FileChooser.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/OutputSequenceAttributes.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/SequenceFilter.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser/TextAreaSink.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/Database.java
share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup/ProgList.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdFunResolve.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdVarResolve.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/Ajax.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/Dependent.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/ParseAcd.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/Application.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationFields.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd/ApplicationParam.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AcdVariableResolve.java
share/EMBOSS/jemboss/org/emboss/jemboss/parser/AjaxUtil.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/BatchUpdateTimer.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/JembossProcess.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/ListFile.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/ResultList.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/ResultsUpdateTimer.java
share/EMBOSS/jemboss/org/emboss/jemboss/programs/RunEmbossApplication.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossAuthServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossAuthThread.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/JembossFileAuthServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/server/TestPublicServer.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/AuthPopup.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/CallAjax.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetWossname.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossRun.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/JembossSoapException.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PendingResults.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PrivateRequest.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/ServerSetup.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileRoots.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/FileList.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/PublicRequest.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetACD.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/GetHelp.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/ShowDB.java
share/EMBOSS/jemboss/org/emboss/jemboss/soap/MakeFileSafe.java
share/EMBOSS/jemboss/utils/install-jemboss-server.sh
share/EMBOSS/jemboss/utils/keys.sh
share/EMBOSS/jemboss/utils/makeJNLP.sh
share/EMBOSS/jemboss/utils/template.html
share/EMBOSS/jemboss/utils/README
share/EMBOSS/jemboss/utils/makeJar.csh
share/EMBOSS/jemboss/readme.html
share/EMBOSS/jemboss/resources/jemboss.properties
share/EMBOSS/jemboss/resources/readme.txt
share/EMBOSS/jemboss/resources/version
share/EMBOSS/jemboss/runJemboss.csh
share/EMBOSS/plstnd5.fnt
share/EMBOSS/plxtnd5.fnt
share/EMBOSS/test/data/aligna.dna
share/EMBOSS/test/data/aligna.prot
share/EMBOSS/test/data/alignapart.dna
share/EMBOSS/test/data/alignapart.prot
share/EMBOSS/test/data/alignb.dna
share/EMBOSS/test/data/alignb.prot
share/EMBOSS/test/data/dna.acedb
share/EMBOSS/test/data/dna.aln
share/EMBOSS/test/data/dna.asn1
share/EMBOSS/test/data/dna.codata
share/EMBOSS/test/data/dna.embl
share/EMBOSS/test/data/dna.fasta
share/EMBOSS/test/data/dna.fitch
share/EMBOSS/test/data/dna.gcg
share/EMBOSS/test/data/dna.gcg8
share/EMBOSS/test/data/dna.genbank
share/EMBOSS/test/data/dna.ig
share/EMBOSS/test/data/dna.m-acedb
share/EMBOSS/test/data/dna.m-codata
share/EMBOSS/test/data/dna.m-embl
share/EMBOSS/test/data/dna.m-fasta
share/EMBOSS/test/data/dna.m-fasta-long
share/EMBOSS/test/data/dna.m-ncbi
share/EMBOSS/test/data/dna.m-strider
share/EMBOSS/test/data/dna.msf
share/EMBOSS/test/data/dna.msf8
share/EMBOSS/test/data/dna.ncbi
share/EMBOSS/test/data/dna.phylip
share/EMBOSS/test/data/dna.phylip3
share/EMBOSS/test/data/dna.staden
share/EMBOSS/test/data/dna.strider
share/EMBOSS/test/data/dna.text
share/EMBOSS/test/data/feat.emft
share/EMBOSS/test/data/feat.fasta
share/EMBOSS/test/data/feat.pir
share/EMBOSS/test/data/paamir.pep
share/EMBOSS/test/data/pax6_cdna.fasta
share/EMBOSS/test/data/prot.acedb
share/EMBOSS/test/data/prot.codata
share/EMBOSS/test/data/prot.fasta
share/EMBOSS/test/data/prot.gcg
share/EMBOSS/test/data/prot.gcg8
share/EMBOSS/test/data/prot.ig
share/EMBOSS/test/data/prot.m-acedb
share/EMBOSS/test/data/prot.m-codata
share/EMBOSS/test/data/prot.m-fasta
share/EMBOSS/test/data/prot.m-nbrf
share/EMBOSS/test/data/prot.m-ncbi
share/EMBOSS/test/data/prot.m-swiss
share/EMBOSS/test/data/prot.nbrf
share/EMBOSS/test/data/prot.ncbi
share/EMBOSS/test/data/prot.swiss
share/EMBOSS/test/data/prot.text
share/EMBOSS/test/data/tranalign.pep
share/EMBOSS/test/data/tranalign.seq
share/EMBOSS/test/data/z83307.seq
share/EMBOSS/test/embl/acnum.hit
share/EMBOSS/test/embl/acnum.trg
share/EMBOSS/test/embl/des.hit
share/EMBOSS/test/embl/des.trg
share/EMBOSS/test/embl/division.lkp
share/EMBOSS/test/embl/entrynam.idx
share/EMBOSS/test/embl/est.dat
share/EMBOSS/test/embl/fun.dat
share/EMBOSS/test/embl/hum1.dat
share/EMBOSS/test/embl/inv.dat
share/EMBOSS/test/embl/keyword.hit
share/EMBOSS/test/embl/keyword.trg
share/EMBOSS/test/embl/pln.dat
share/EMBOSS/test/embl/pro.dat
share/EMBOSS/test/embl/rod.dat
share/EMBOSS/test/embl/seqvn.hit
share/EMBOSS/test/embl/seqvn.trg
share/EMBOSS/test/embl/sts.dat
share/EMBOSS/test/embl/taxon.hit
share/EMBOSS/test/embl/taxon.trg
share/EMBOSS/test/embl/vrl.dat
share/EMBOSS/test/embl/vrt.dat
share/EMBOSS/test/genbank/acnum.hit
share/EMBOSS/test/genbank/acnum.trg
share/EMBOSS/test/genbank/division.lkp
share/EMBOSS/test/genbank/entrynam.idx
share/EMBOSS/test/genbank/seqvn.hit
share/EMBOSS/test/genbank/seqvn.trg
share/EMBOSS/test/genbank/des.hit
share/EMBOSS/test/genbank/des.trg
share/EMBOSS/test/genbank/keyword.hit
share/EMBOSS/test/genbank/keyword.trg
share/EMBOSS/test/genbank/taxon.hit
share/EMBOSS/test/genbank/taxon.trg
share/EMBOSS/test/genbank/gbbct1.seq
share/EMBOSS/test/genbank/gbest1.seq
share/EMBOSS/test/genbank/gbinv1.seq
share/EMBOSS/test/genbank/gbpln1.seq
share/EMBOSS/test/genbank/gbpln2.seq
share/EMBOSS/test/genbank/gbpri1.seq
share/EMBOSS/test/genbank/gbrod1.seq
share/EMBOSS/test/genbank/gbsts1.seq
share/EMBOSS/test/genbank/gbvrl1.seq
share/EMBOSS/test/genbank/gbvrt.seq
share/EMBOSS/test/gb/acnum.hit
share/EMBOSS/test/gb/acnum.trg
share/EMBOSS/test/gb/division.lkp
share/EMBOSS/test/gb/entrynam.idx
share/EMBOSS/test/gb/seqvn.hit
share/EMBOSS/test/gb/seqvn.trg
share/EMBOSS/test/gb/des.hit
share/EMBOSS/test/gb/des.trg
share/EMBOSS/test/gb/keyword.hit
share/EMBOSS/test/gb/keyword.trg
share/EMBOSS/test/gb/taxon.hit
share/EMBOSS/test/gb/taxon.trg
share/EMBOSS/test/gb/ba.ref
share/EMBOSS/test/gb/ba.seq
share/EMBOSS/test/gb/htg.ref
share/EMBOSS/test/gb/htg.seq
share/EMBOSS/test/pir/acnum.hit
share/EMBOSS/test/pir/acnum.trg
share/EMBOSS/test/pir/des.hit
share/EMBOSS/test/pir/des.trg
share/EMBOSS/test/pir/division.lkp
share/EMBOSS/test/pir/entrynam.idx
share/EMBOSS/test/pir/keyword.hit
share/EMBOSS/test/pir/keyword.trg
share/EMBOSS/test/pir/taxon.hit
share/EMBOSS/test/pir/taxon.trg
share/EMBOSS/test/pir/pir1.header
share/EMBOSS/test/pir/pir1.names
share/EMBOSS/test/pir/pir1.numbers
share/EMBOSS/test/pir/pir1.offset
share/EMBOSS/test/pir/pir1.ref
share/EMBOSS/test/pir/pir1.seq
share/EMBOSS/test/pir/pir2.header
share/EMBOSS/test/pir/pir2.names
share/EMBOSS/test/pir/pir2.numbers
share/EMBOSS/test/pir/pir2.offset
share/EMBOSS/test/pir/pir2.ref
share/EMBOSS/test/pir/pir2.seq
share/EMBOSS/test/pir/pir3.header
share/EMBOSS/test/pir/pir3.names
share/EMBOSS/test/pir/pir3.numbers
share/EMBOSS/test/pir/pir3.offset
share/EMBOSS/test/pir/pir3.ref
share/EMBOSS/test/pir/pir3.seq
share/EMBOSS/test/pir/pir4.header
share/EMBOSS/test/pir/pir4.names
share/EMBOSS/test/pir/pir4.numbers
share/EMBOSS/test/pir/pir4.offset
share/EMBOSS/test/pir/pir4.ref
share/EMBOSS/test/pir/pir4.seq
share/EMBOSS/test/swiss/acnum.hit
share/EMBOSS/test/swiss/acnum.trg
share/EMBOSS/test/swiss/division.lkp
share/EMBOSS/test/swiss/entrynam.idx
share/EMBOSS/test/swiss/seq.dat
share/EMBOSS/test/swiss/seqvn.hit
share/EMBOSS/test/swiss/seqvn.trg
share/EMBOSS/test/swiss/des.hit
share/EMBOSS/test/swiss/des.trg
share/EMBOSS/test/swiss/keyword.hit
share/EMBOSS/test/swiss/keyword.trg
share/EMBOSS/test/swiss/taxon.hit
share/EMBOSS/test/swiss/taxon.trg
share/EMBOSS/test/swnew/acnum.hit
share/EMBOSS/test/swnew/acnum.trg
share/EMBOSS/test/swnew/division.lkp
share/EMBOSS/test/swnew/entrynam.idx
share/EMBOSS/test/swnew/new_seq.dat
share/EMBOSS/test/swnew/upd_ann.dat
share/EMBOSS/test/swnew/upd_seq.dat
share/EMBOSS/test/swnew/seqvn.hit
share/EMBOSS/test/swnew/seqvn.trg
share/EMBOSS/test/swnew/des.hit
share/EMBOSS/test/swnew/des.trg
share/EMBOSS/test/swnew/keyword.hit
share/EMBOSS/test/swnew/keyword.trg
share/EMBOSS/test/swnew/taxon.hit
share/EMBOSS/test/swnew/taxon.trg
share/EMBOSS/test/wormpep/acnum.hit
share/EMBOSS/test/wormpep/acnum.trg
share/EMBOSS/test/wormpep/division.lkp
share/EMBOSS/test/wormpep/entrynam.idx
share/EMBOSS/test/wormpep/wormpep
share/EMBOSS/test/wormpep/des.hit
share/EMBOSS/test/wormpep/des.trg
share/doc/EMBOSS/manuals/EMBOSS-FreeBSD-HOWTO.txt
share/doc/EMBOSS/manuals/admin.aux
share/doc/EMBOSS/manuals/admin.dvi
share/doc/EMBOSS/manuals/admin.log
share/doc/EMBOSS/manuals/admin.pdf
share/doc/EMBOSS/manuals/admin.ps
share/doc/EMBOSS/manuals/admin.sty
share/doc/EMBOSS/manuals/admin.tex
share/doc/EMBOSS/manuals/admin.toc
share/doc/EMBOSS/manuals/adminguide.tar.gz
share/doc/EMBOSS/manuals/emboss_qg.pdf
share/doc/EMBOSS/manuals/emboss_qg.ps
share/doc/EMBOSS/manuals/program.ps.gz
share/doc/EMBOSS/programs/html/abiview.html
share/doc/EMBOSS/programs/html/abiview0.gif
share/doc/EMBOSS/programs/html/ajtest.html
share/doc/EMBOSS/programs/html/alignment_consensus_group.html
share/doc/EMBOSS/programs/html/alignment_differences_group.html
share/doc/EMBOSS/programs/html/alignment_dot_plots_group.html
share/doc/EMBOSS/programs/html/alignment_global_group.html
share/doc/EMBOSS/programs/html/alignment_local_group.html
share/doc/EMBOSS/programs/html/alignment_multiple_group.html
share/doc/EMBOSS/programs/html/antigenic.html
share/doc/EMBOSS/programs/html/backtranseq.html
share/doc/EMBOSS/programs/html/banana.html
share/doc/EMBOSS/programs/html/banana0.gif
share/doc/EMBOSS/programs/html/biosed.html
share/doc/EMBOSS/programs/html/btwisted.html
share/doc/EMBOSS/programs/html/cai.html
share/doc/EMBOSS/programs/html/chaos.html
share/doc/EMBOSS/programs/html/chaos0.gif
share/doc/EMBOSS/programs/html/charge.html
share/doc/EMBOSS/programs/html/checktrans.html
share/doc/EMBOSS/programs/html/chips.html
share/doc/EMBOSS/programs/html/cirdna.html
share/doc/EMBOSS/programs/html/clique.html
share/doc/EMBOSS/programs/html/codcmp.html
share/doc/EMBOSS/programs/html/coderet.html
share/doc/EMBOSS/programs/html/compseq.html
share/doc/EMBOSS/programs/html/cons.html
share/doc/EMBOSS/programs/html/consense.html
share/doc/EMBOSS/programs/html/contacts.html
share/doc/EMBOSS/programs/html/contml.html
share/doc/EMBOSS/programs/html/contrast.html
share/doc/EMBOSS/programs/html/cpgplot.html
share/doc/EMBOSS/programs/html/cpgplot0.gif
share/doc/EMBOSS/programs/html/cpgreport.html
share/doc/EMBOSS/programs/html/cusp.html
share/doc/EMBOSS/programs/html/cutgextract.html
share/doc/EMBOSS/programs/html/cutseq.html
share/doc/EMBOSS/programs/html/dan.html
share/doc/EMBOSS/programs/html/dbiblast.html
share/doc/EMBOSS/programs/html/dbifasta.html
share/doc/EMBOSS/programs/html/dbiflat.html
share/doc/EMBOSS/programs/html/dbigcg.html
share/doc/EMBOSS/programs/html/degapseq.html
share/doc/EMBOSS/programs/html/descseq.html
share/doc/EMBOSS/programs/html/diffseq.html
share/doc/EMBOSS/programs/html/digest.html
share/doc/EMBOSS/programs/html/display_group.html
share/doc/EMBOSS/programs/html/distmat.html
share/doc/EMBOSS/programs/html/dnacomp.html
share/doc/EMBOSS/programs/html/dnadist.html
share/doc/EMBOSS/programs/html/dnainvar.html
share/doc/EMBOSS/programs/html/dnaml.html
share/doc/EMBOSS/programs/html/dnamlk.html
share/doc/EMBOSS/programs/html/dnapars.html
share/doc/EMBOSS/programs/html/dnapenny.html
share/doc/EMBOSS/programs/html/dollop.html
share/doc/EMBOSS/programs/html/dolpenny.html
share/doc/EMBOSS/programs/html/domainer.html
share/doc/EMBOSS/programs/html/dotmatcher.html
share/doc/EMBOSS/programs/html/dotmatcher0.gif
share/doc/EMBOSS/programs/html/dotpath.html
share/doc/EMBOSS/programs/html/dottup.html
share/doc/EMBOSS/programs/html/dottup0.gif
share/doc/EMBOSS/programs/html/dreg.html
share/doc/EMBOSS/programs/html/eclique.html
share/doc/EMBOSS/programs/html/econsense.html
share/doc/EMBOSS/programs/html/econtml.html
share/doc/EMBOSS/programs/html/econtrast.html
share/doc/EMBOSS/programs/html/edit_group.html
share/doc/EMBOSS/programs/html/ednacomp.html
share/doc/EMBOSS/programs/html/ednadist.html
share/doc/EMBOSS/programs/html/ednainvar.html
share/doc/EMBOSS/programs/html/ednaml.html
share/doc/EMBOSS/programs/html/ednamlk.html
share/doc/EMBOSS/programs/html/ednapars.html
share/doc/EMBOSS/programs/html/ednapenny.html
share/doc/EMBOSS/programs/html/edollop.html
share/doc/EMBOSS/programs/html/edolpenny.html
share/doc/EMBOSS/programs/html/efactor.html
share/doc/EMBOSS/programs/html/efitch.html
share/doc/EMBOSS/programs/html/egendist.html
share/doc/EMBOSS/programs/html/einverted.html
share/doc/EMBOSS/programs/html/ekitsch.html
share/doc/EMBOSS/programs/html/emboss_icon.gif
share/doc/EMBOSS/programs/html/embossdata.html
share/doc/EMBOSS/programs/html/embossversion.html
share/doc/EMBOSS/programs/html/emix.html
share/doc/EMBOSS/programs/html/emma.html
share/doc/EMBOSS/programs/html/emowse.html
share/doc/EMBOSS/programs/html/eneighbor.html
share/doc/EMBOSS/programs/html/entret.html
share/doc/EMBOSS/programs/html/enzyme_kinetics_group.html
share/doc/EMBOSS/programs/html/epenny.html
share/doc/EMBOSS/programs/html/eprotdist.html
share/doc/EMBOSS/programs/html/eprotpars.html
share/doc/EMBOSS/programs/html/equicktandem.html
share/doc/EMBOSS/programs/html/erestml.html
share/doc/EMBOSS/programs/html/eseqboot.html
share/doc/EMBOSS/programs/html/est2genome.html
share/doc/EMBOSS/programs/html/etandem.html
share/doc/EMBOSS/programs/html/extractfeat.html
share/doc/EMBOSS/programs/html/extractseq.html
share/doc/EMBOSS/programs/html/factor.html
share/doc/EMBOSS/programs/html/feature_tables_group.html
share/doc/EMBOSS/programs/html/findkm.html
share/doc/EMBOSS/programs/html/findkm0.gif
share/doc/EMBOSS/programs/html/fitch.html
share/doc/EMBOSS/programs/html/freak.html
share/doc/EMBOSS/programs/html/fuzznuc.html
share/doc/EMBOSS/programs/html/fuzzpro.html
share/doc/EMBOSS/programs/html/fuzztran.html
share/doc/EMBOSS/programs/html/garnier.html
share/doc/EMBOSS/programs/html/geecee.html
share/doc/EMBOSS/programs/html/gendist.html
share/doc/EMBOSS/programs/html/getorf.html
share/doc/EMBOSS/programs/html/groups.html
share/doc/EMBOSS/programs/html/helixturnhelix.html
share/doc/EMBOSS/programs/html/hmoment.html
share/doc/EMBOSS/programs/html/iep.html
share/doc/EMBOSS/programs/html/index.html
share/doc/EMBOSS/programs/html/infoalign.html
share/doc/EMBOSS/programs/html/information_group.html
share/doc/EMBOSS/programs/html/infoseq.html
share/doc/EMBOSS/programs/html/isochore.html
share/doc/EMBOSS/programs/html/isochore0.gif
share/doc/EMBOSS/programs/html/kitsch.html
share/doc/EMBOSS/programs/html/lindna.gif
share/doc/EMBOSS/programs/html/lindna.html
share/doc/EMBOSS/programs/html/listor.html
share/doc/EMBOSS/programs/html/marscan.html
share/doc/EMBOSS/programs/html/maskfeat.html
share/doc/EMBOSS/programs/html/maskseq.html
share/doc/EMBOSS/programs/html/matcher.html
share/doc/EMBOSS/programs/html/megamerger.html
share/doc/EMBOSS/programs/html/menus_group.html
share/doc/EMBOSS/programs/html/merger.html
share/doc/EMBOSS/programs/html/mix.html
share/doc/EMBOSS/programs/html/msbar.html
share/doc/EMBOSS/programs/html/mse.html
share/doc/EMBOSS/programs/html/mwfilter.html
share/doc/EMBOSS/programs/html/needle.html
share/doc/EMBOSS/programs/html/neighbor.html
share/doc/EMBOSS/programs/html/newcpgreport.html
share/doc/EMBOSS/programs/html/newcpgseek.html
share/doc/EMBOSS/programs/html/newseq.html
share/doc/EMBOSS/programs/html/noreturn.html
share/doc/EMBOSS/programs/html/notseq.html
share/doc/EMBOSS/programs/html/nrscope.html
share/doc/EMBOSS/programs/html/nthseq.html
share/doc/EMBOSS/programs/html/nucleic_2d_structure_group.html
share/doc/EMBOSS/programs/html/nucleic_codon_usage_group.html
share/doc/EMBOSS/programs/html/nucleic_composition_group.html
share/doc/EMBOSS/programs/html/nucleic_cpg_islands_group.html
share/doc/EMBOSS/programs/html/nucleic_gene_finding_group.html
share/doc/EMBOSS/programs/html/nucleic_motifs_group.html
share/doc/EMBOSS/programs/html/nucleic_mutation_group.html
share/doc/EMBOSS/programs/html/nucleic_primers_group.html
share/doc/EMBOSS/programs/html/nucleic_profiles_group.html
share/doc/EMBOSS/programs/html/nucleic_repeats_group.html
share/doc/EMBOSS/programs/html/nucleic_restriction_group.html
share/doc/EMBOSS/programs/html/nucleic_transcription_group.html
share/doc/EMBOSS/programs/html/nucleic_translation_group.html
share/doc/EMBOSS/programs/html/octanol.html
share/doc/EMBOSS/programs/html/octanol0.gif
share/doc/EMBOSS/programs/html/oddcomp.html
share/doc/EMBOSS/programs/html/palindrome.html
share/doc/EMBOSS/programs/html/pasteseq.html
share/doc/EMBOSS/programs/html/patmatdb.html
share/doc/EMBOSS/programs/html/patmatmotifs.html
share/doc/EMBOSS/programs/html/penny.html
share/doc/EMBOSS/programs/html/pepcoil.html
share/doc/EMBOSS/programs/html/pepinfo.html
share/doc/EMBOSS/programs/html/pepinfo1.gif
share/doc/EMBOSS/programs/html/pepinfo2.gif
share/doc/EMBOSS/programs/html/pepnet.html
share/doc/EMBOSS/programs/html/pepnet0.gif
share/doc/EMBOSS/programs/html/pepstats.html
share/doc/EMBOSS/programs/html/pepwheel.html
share/doc/EMBOSS/programs/html/pepwheel0.gif
share/doc/EMBOSS/programs/html/pepwindow.html
share/doc/EMBOSS/programs/html/pepwindow0.gif
share/doc/EMBOSS/programs/html/pepwindowall.html
share/doc/EMBOSS/programs/html/pepwindowall0.gif
share/doc/EMBOSS/programs/html/phylogeny_group.html
share/doc/EMBOSS/programs/html/plotcon.html
share/doc/EMBOSS/programs/html/plotorf.html
share/doc/EMBOSS/programs/html/plotorf0.gif
share/doc/EMBOSS/programs/html/polydot.html
share/doc/EMBOSS/programs/html/polydot0.gif
share/doc/EMBOSS/programs/html/preg.html
share/doc/EMBOSS/programs/html/prettyplot.html
share/doc/EMBOSS/programs/html/prettyplot3.gif
share/doc/EMBOSS/programs/html/prettyplot4.gif
share/doc/EMBOSS/programs/html/prettyseq.html
share/doc/EMBOSS/programs/html/primersearch.html
share/doc/EMBOSS/programs/html/printsextract.html
share/doc/EMBOSS/programs/html/profit.html
share/doc/EMBOSS/programs/html/prophecy.html
share/doc/EMBOSS/programs/html/prophet.html
share/doc/EMBOSS/programs/html/prosextract.html
share/doc/EMBOSS/programs/html/protdist.html
share/doc/EMBOSS/programs/html/protein_2d_structure_group.html
share/doc/EMBOSS/programs/html/protein_3d_structure_group.html
share/doc/EMBOSS/programs/html/protein_composition_group.html
share/doc/EMBOSS/programs/html/protein_motifs_group.html
share/doc/EMBOSS/programs/html/protein_mutation_group.html
share/doc/EMBOSS/programs/html/protein_profiles_group.html
share/doc/EMBOSS/programs/html/protein_structure_group.html
share/doc/EMBOSS/programs/html/pscan.html
share/doc/EMBOSS/programs/html/rebaseextract.html
share/doc/EMBOSS/programs/html/recode.html
share/doc/EMBOSS/programs/html/recoder.html
share/doc/EMBOSS/programs/html/redata.html
share/doc/EMBOSS/programs/html/remap.html
share/doc/EMBOSS/programs/html/restml.html
share/doc/EMBOSS/programs/html/restover.html
share/doc/EMBOSS/programs/html/restrict.html
share/doc/EMBOSS/programs/html/revseq.html
share/doc/EMBOSS/programs/html/scopalign.html
share/doc/EMBOSS/programs/html/scope.html
share/doc/EMBOSS/programs/html/seealso.html
share/doc/EMBOSS/programs/html/seqboot.html
share/doc/EMBOSS/programs/html/seqmatchall.html
share/doc/EMBOSS/programs/html/seqret.html
share/doc/EMBOSS/programs/html/seqretall.html
share/doc/EMBOSS/programs/html/seqretallfeat.html
share/doc/EMBOSS/programs/html/seqretfeat.html
share/doc/EMBOSS/programs/html/seqretset.html
share/doc/EMBOSS/programs/html/seqretsplit.html
share/doc/EMBOSS/programs/html/showalign.html
share/doc/EMBOSS/programs/html/showdb.html
share/doc/EMBOSS/programs/html/showfeat.html
share/doc/EMBOSS/programs/html/showorf.html
share/doc/EMBOSS/programs/html/showseq.html
share/doc/EMBOSS/programs/html/shuffleseq.html
share/doc/EMBOSS/programs/html/sigcleave.html
share/doc/EMBOSS/programs/html/siggen.html
share/doc/EMBOSS/programs/html/sigscan.html
share/doc/EMBOSS/programs/html/silent.html
share/doc/EMBOSS/programs/html/splitter.html
share/doc/EMBOSS/programs/html/stamps.html
share/doc/EMBOSS/programs/html/stretcher.html
share/doc/EMBOSS/programs/html/stssearch.html
share/doc/EMBOSS/programs/html/supermatcher.html
share/doc/EMBOSS/programs/html/swissparse.html
share/doc/EMBOSS/programs/html/syco.html
share/doc/EMBOSS/programs/html/syco0.gif
share/doc/EMBOSS/programs/html/syco1.gif
share/doc/EMBOSS/programs/html/test_group.html
share/doc/EMBOSS/programs/html/textsearch.html
share/doc/EMBOSS/programs/html/tfextract.html
share/doc/EMBOSS/programs/html/tfm.html
share/doc/EMBOSS/programs/html/tfscan.html
share/doc/EMBOSS/programs/html/tmap.html
share/doc/EMBOSS/programs/html/tmap0.gif
share/doc/EMBOSS/programs/html/topo.gif
share/doc/EMBOSS/programs/html/topo.html
share/doc/EMBOSS/programs/html/transeq.html
share/doc/EMBOSS/programs/html/trimest.html
share/doc/EMBOSS/programs/html/trimseq.html
share/doc/EMBOSS/programs/html/utils_database_creation_group.html
share/doc/EMBOSS/programs/html/utils_database_indexing_group.html
share/doc/EMBOSS/programs/html/utils_misc_group.html
share/doc/EMBOSS/programs/html/vectorstrip.html
share/doc/EMBOSS/programs/html/water.html
share/doc/EMBOSS/programs/html/wobble.html
share/doc/EMBOSS/programs/html/wobble0.gif
share/doc/EMBOSS/programs/html/wordcount.html
share/doc/EMBOSS/programs/html/wordmatch.html
share/doc/EMBOSS/programs/html/wossname.html
share/doc/EMBOSS/programs/html/pdbtosp.html
share/doc/EMBOSS/programs/html/psiblasts.html
share/doc/EMBOSS/programs/html/scopparse.html
share/doc/EMBOSS/programs/html/seqnr.html
share/doc/EMBOSS/programs/html/seqsort.html
share/doc/EMBOSS/programs/html/tranalign.html
share/doc/EMBOSS/programs/html/union.html
share/doc/EMBOSS/programs/html/whichdb.html
share/doc/EMBOSS/programs/html/yank.html
share/doc/EMBOSS/programs/html/alignwrap.html
share/doc/EMBOSS/programs/html/dichet.html
share/doc/EMBOSS/programs/html/eprimer3.html
share/doc/EMBOSS/programs/html/interface.html
share/doc/EMBOSS/programs/html/jembossctl.html
share/doc/EMBOSS/programs/text/SITE-DIRECTED.txt
share/doc/EMBOSS/programs/text/abiview.txt
share/doc/EMBOSS/programs/text/ajtest.txt
share/doc/EMBOSS/programs/text/antigenic.txt
share/doc/EMBOSS/programs/text/backtranseq.txt
share/doc/EMBOSS/programs/text/banana.txt
share/doc/EMBOSS/programs/text/biosed.txt
share/doc/EMBOSS/programs/text/btwisted.txt
share/doc/EMBOSS/programs/text/cai.txt
share/doc/EMBOSS/programs/text/chaos.txt
share/doc/EMBOSS/programs/text/charge.txt
share/doc/EMBOSS/programs/text/checktrans.txt
share/doc/EMBOSS/programs/text/chips.txt
share/doc/EMBOSS/programs/text/cirdna.txt
share/doc/EMBOSS/programs/text/clique.txt
share/doc/EMBOSS/programs/text/codcmp.txt
share/doc/EMBOSS/programs/text/coderet.txt
share/doc/EMBOSS/programs/text/complex.txt
share/doc/EMBOSS/programs/text/compseq.txt
share/doc/EMBOSS/programs/text/cons.txt
share/doc/EMBOSS/programs/text/consense.txt
share/doc/EMBOSS/programs/text/contacts.txt
share/doc/EMBOSS/programs/text/contml.txt
share/doc/EMBOSS/programs/text/contrast.txt
share/doc/EMBOSS/programs/text/cpgplot.txt
share/doc/EMBOSS/programs/text/cpgreport.txt
share/doc/EMBOSS/programs/text/cusp.txt
share/doc/EMBOSS/programs/text/cutgextract.txt
share/doc/EMBOSS/programs/text/cutseq.txt
share/doc/EMBOSS/programs/text/dan.txt
share/doc/EMBOSS/programs/text/dbiblast.txt
share/doc/EMBOSS/programs/text/dbifasta.txt
share/doc/EMBOSS/programs/text/dbiflat.txt
share/doc/EMBOSS/programs/text/dbigcg.txt
share/doc/EMBOSS/programs/text/degapseq.txt
share/doc/EMBOSS/programs/text/descseq.txt
share/doc/EMBOSS/programs/text/diffseq.txt
share/doc/EMBOSS/programs/text/digest.txt
share/doc/EMBOSS/programs/text/distmat.txt
share/doc/EMBOSS/programs/text/dnacomp.txt
share/doc/EMBOSS/programs/text/dnadist.txt
share/doc/EMBOSS/programs/text/dnainvar.txt
share/doc/EMBOSS/programs/text/dnaml.txt
share/doc/EMBOSS/programs/text/dnamlk.txt
share/doc/EMBOSS/programs/text/dnapars.txt
share/doc/EMBOSS/programs/text/dnapenny.txt
share/doc/EMBOSS/programs/text/dollop.txt
share/doc/EMBOSS/programs/text/dolpenny.txt
share/doc/EMBOSS/programs/text/domainer.txt
share/doc/EMBOSS/programs/text/dotmatcher.txt
share/doc/EMBOSS/programs/text/dotpath.txt
share/doc/EMBOSS/programs/text/dottup.txt
share/doc/EMBOSS/programs/text/dreg.txt
share/doc/EMBOSS/programs/text/eclique.txt
share/doc/EMBOSS/programs/text/econsense.txt
share/doc/EMBOSS/programs/text/econtml.txt
share/doc/EMBOSS/programs/text/econtrast.txt
share/doc/EMBOSS/programs/text/ednacomp.txt
share/doc/EMBOSS/programs/text/ednadist.txt
share/doc/EMBOSS/programs/text/ednainvar.txt
share/doc/EMBOSS/programs/text/ednaml.txt
share/doc/EMBOSS/programs/text/ednamlk.txt
share/doc/EMBOSS/programs/text/ednapars.txt
share/doc/EMBOSS/programs/text/ednapenny.txt
share/doc/EMBOSS/programs/text/edollop.txt
share/doc/EMBOSS/programs/text/edolpenny.txt
share/doc/EMBOSS/programs/text/efactor.txt
share/doc/EMBOSS/programs/text/efitch.txt
share/doc/EMBOSS/programs/text/egendist.txt
share/doc/EMBOSS/programs/text/einverted.txt
share/doc/EMBOSS/programs/text/ekitsch.txt
share/doc/EMBOSS/programs/text/embossdata.txt
share/doc/EMBOSS/programs/text/embossversion.txt
share/doc/EMBOSS/programs/text/emix.txt
share/doc/EMBOSS/programs/text/emma.txt
share/doc/EMBOSS/programs/text/emowse.txt
share/doc/EMBOSS/programs/text/eneighbor.txt
share/doc/EMBOSS/programs/text/entret.txt
share/doc/EMBOSS/programs/text/epenny.txt
share/doc/EMBOSS/programs/text/eprotdist.txt
share/doc/EMBOSS/programs/text/eprotpars.txt
share/doc/EMBOSS/programs/text/equicktandem.txt
share/doc/EMBOSS/programs/text/erestml.txt
share/doc/EMBOSS/programs/text/eseqboot.txt
share/doc/EMBOSS/programs/text/est2genome.txt
share/doc/EMBOSS/programs/text/etandem.txt
share/doc/EMBOSS/programs/text/extractfeat.txt
share/doc/EMBOSS/programs/text/extractseq.txt
share/doc/EMBOSS/programs/text/factor.txt
share/doc/EMBOSS/programs/text/findkm.txt
share/doc/EMBOSS/programs/text/fitch.txt
share/doc/EMBOSS/programs/text/freak.txt
share/doc/EMBOSS/programs/text/fuzznuc.txt
share/doc/EMBOSS/programs/text/fuzzpro.txt
share/doc/EMBOSS/programs/text/fuzztran.txt
share/doc/EMBOSS/programs/text/garnier.txt
share/doc/EMBOSS/programs/text/geecee.txt
share/doc/EMBOSS/programs/text/gendist.txt
share/doc/EMBOSS/programs/text/getorf.txt
share/doc/EMBOSS/programs/text/helixturnhelix.txt
share/doc/EMBOSS/programs/text/hmoment.txt
share/doc/EMBOSS/programs/text/iep.txt
share/doc/EMBOSS/programs/text/infoalign.txt
share/doc/EMBOSS/programs/text/infoseq.txt
share/doc/EMBOSS/programs/text/isochore.txt
share/doc/EMBOSS/programs/text/kitsch.txt
share/doc/EMBOSS/programs/text/lindna.txt
share/doc/EMBOSS/programs/text/listor.txt
share/doc/EMBOSS/programs/text/marscan.txt
share/doc/EMBOSS/programs/text/maskfeat.txt
share/doc/EMBOSS/programs/text/maskseq.txt
share/doc/EMBOSS/programs/text/matcher.txt
share/doc/EMBOSS/programs/text/megamerger.txt
share/doc/EMBOSS/programs/text/merger.txt
share/doc/EMBOSS/programs/text/mix.txt
share/doc/EMBOSS/programs/text/msbar.txt
share/doc/EMBOSS/programs/text/mse.txt
share/doc/EMBOSS/programs/text/mwfilter.txt
share/doc/EMBOSS/programs/text/needle.txt
share/doc/EMBOSS/programs/text/neighbor.txt
share/doc/EMBOSS/programs/text/newcpgreport.txt
share/doc/EMBOSS/programs/text/newcpgseek.txt
share/doc/EMBOSS/programs/text/newseq.txt
share/doc/EMBOSS/programs/text/noreturn.txt
share/doc/EMBOSS/programs/text/notseq.txt
share/doc/EMBOSS/programs/text/nrscope.txt
share/doc/EMBOSS/programs/text/nthseq.txt
share/doc/EMBOSS/programs/text/octanol.txt
share/doc/EMBOSS/programs/text/oddcomp.txt
share/doc/EMBOSS/programs/text/palindrome.txt
share/doc/EMBOSS/programs/text/pasteseq.txt
share/doc/EMBOSS/programs/text/patmatdb.txt
share/doc/EMBOSS/programs/text/patmatmotifs.txt
share/doc/EMBOSS/programs/text/penny.txt
share/doc/EMBOSS/programs/text/pepcoil.txt
share/doc/EMBOSS/programs/text/pepinfo.txt
share/doc/EMBOSS/programs/text/pepnet.txt
share/doc/EMBOSS/programs/text/pepstats.txt
share/doc/EMBOSS/programs/text/pepwheel.txt
share/doc/EMBOSS/programs/text/pepwindow.txt
share/doc/EMBOSS/programs/text/pepwindowall.txt
share/doc/EMBOSS/programs/text/plotcon.txt
share/doc/EMBOSS/programs/text/plotorf.txt
share/doc/EMBOSS/programs/text/polydot.txt
share/doc/EMBOSS/programs/text/preg.txt
share/doc/EMBOSS/programs/text/prettyplot.txt
share/doc/EMBOSS/programs/text/prettyseq.txt
share/doc/EMBOSS/programs/text/primersearch.txt
share/doc/EMBOSS/programs/text/printsextract.txt
share/doc/EMBOSS/programs/text/profit.txt
share/doc/EMBOSS/programs/text/prophecy.txt
share/doc/EMBOSS/programs/text/prophet.txt
share/doc/EMBOSS/programs/text/prosextract.txt
share/doc/EMBOSS/programs/text/protdist.txt
share/doc/EMBOSS/programs/text/pscan.txt
share/doc/EMBOSS/programs/text/rebaseextract.txt
share/doc/EMBOSS/programs/text/recode.txt
share/doc/EMBOSS/programs/text/recoder.txt
share/doc/EMBOSS/programs/text/redata.txt
share/doc/EMBOSS/programs/text/remap.txt
share/doc/EMBOSS/programs/text/restml.txt
share/doc/EMBOSS/programs/text/restover.txt
share/doc/EMBOSS/programs/text/restrict.txt
share/doc/EMBOSS/programs/text/revseq.txt
share/doc/EMBOSS/programs/text/scopalign.txt
share/doc/EMBOSS/programs/text/scope.txt
share/doc/EMBOSS/programs/text/seealso.txt
share/doc/EMBOSS/programs/text/seqboot.txt
share/doc/EMBOSS/programs/text/seqmatchall.txt
share/doc/EMBOSS/programs/text/seqret.txt
share/doc/EMBOSS/programs/text/seqretall.txt
share/doc/EMBOSS/programs/text/seqretallfeat.txt
share/doc/EMBOSS/programs/text/seqretfeat.txt
share/doc/EMBOSS/programs/text/seqretset.txt
share/doc/EMBOSS/programs/text/seqretsplit.txt
share/doc/EMBOSS/programs/text/showalign.txt
share/doc/EMBOSS/programs/text/showdb.txt
share/doc/EMBOSS/programs/text/showfeat.txt
share/doc/EMBOSS/programs/text/showorf.txt
share/doc/EMBOSS/programs/text/showseq.txt
share/doc/EMBOSS/programs/text/shuffleseq.txt
share/doc/EMBOSS/programs/text/sigcleave.txt
share/doc/EMBOSS/programs/text/siggen.txt
share/doc/EMBOSS/programs/text/sigscan.txt
share/doc/EMBOSS/programs/text/silent.txt
share/doc/EMBOSS/programs/text/splitter.txt
share/doc/EMBOSS/programs/text/stamps.txt
share/doc/EMBOSS/programs/text/stretcher.txt
share/doc/EMBOSS/programs/text/stssearch.txt
share/doc/EMBOSS/programs/text/supermatcher.txt
share/doc/EMBOSS/programs/text/swissparse.txt
share/doc/EMBOSS/programs/text/syco.txt
share/doc/EMBOSS/programs/text/textsearch.txt
share/doc/EMBOSS/programs/text/tfextract.txt
share/doc/EMBOSS/programs/text/tfm.txt
share/doc/EMBOSS/programs/text/tfscan.txt
share/doc/EMBOSS/programs/text/tmap.txt
share/doc/EMBOSS/programs/text/topo.txt
share/doc/EMBOSS/programs/text/transeq.txt
share/doc/EMBOSS/programs/text/trimest.txt
share/doc/EMBOSS/programs/text/trimseq.txt
share/doc/EMBOSS/programs/text/vectorstrip.txt
share/doc/EMBOSS/programs/text/water.txt
share/doc/EMBOSS/programs/text/wobble.txt
share/doc/EMBOSS/programs/text/wordcount.txt
share/doc/EMBOSS/programs/text/wordmatch.txt
share/doc/EMBOSS/programs/text/wossname.txt
share/doc/EMBOSS/programs/text/jembossctl.txt
share/doc/EMBOSS/programs/text/pdbtosp.txt
share/doc/EMBOSS/programs/text/psiblasts.txt
share/doc/EMBOSS/programs/text/scopparse.txt
share/doc/EMBOSS/programs/text/seqnr.txt
share/doc/EMBOSS/programs/text/seqsort.txt
share/doc/EMBOSS/programs/text/tranalign.txt
share/doc/EMBOSS/programs/text/union.txt
share/doc/EMBOSS/programs/text/whichdb.txt
share/doc/EMBOSS/programs/text/yank.txt
share/doc/EMBOSS/programs/text/alignwrap.txt
share/doc/EMBOSS/programs/text/dichet.txt
share/doc/EMBOSS/programs/text/eprimer3.txt
share/doc/EMBOSS/programs/text/interface.txt
share/doc/EMBOSS/tutorials/biblio.bib
share/doc/EMBOSS/tutorials/dottup.ps.gz
share/doc/EMBOSS/tutorials/emboss-gcg.ppt
share/doc/EMBOSS/tutorials/emboss-interfaces.ppt
share/doc/EMBOSS/tutorials/emboss-talk.ppt
share/doc/EMBOSS/tutorials/emboss_tutorial.ps.gz
share/doc/EMBOSS/tutorials/emboss_tutorial.tex
share/doc/EMBOSS/tutorials/pepinfo1.ps.gz
share/doc/EMBOSS/tutorials/pepinfo2.ps.gz
share/doc/EMBOSS/tutorials/plotorf.ps.gz
share/doc/EMBOSS/tutorials/tmap.ps.gz
@dirrm share/doc/EMBOSS/tutorials
@dirrm share/doc/EMBOSS/programs/text
@dirrm share/doc/EMBOSS/programs/html
@dirrm share/doc/EMBOSS/programs
@dirrm share/doc/EMBOSS/manuals
@dirrm share/doc/EMBOSS
@dirrm share/EMBOSS/test/wormpep
@dirrm share/EMBOSS/test/swnew
@dirrm share/EMBOSS/test/swiss
@dirrm share/EMBOSS/test/pir
@dirrm share/EMBOSS/test/genbank
@dirrm share/EMBOSS/test/gb
@dirrm share/EMBOSS/test/embl
@dirrm share/EMBOSS/test/data
@dirrm share/EMBOSS/test
@dirrm share/EMBOSS/jemboss/utils
@dirrm share/EMBOSS/jemboss/resources
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/soap
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/server
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/programs
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/parser/acd
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/parser
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/startup
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/sequenceChooser
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/form
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui/filetree
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss/gui
@dirrm share/EMBOSS/jemboss/org/emboss/jemboss
@dirrm share/EMBOSS/jemboss/org/emboss
@dirrm share/EMBOSS/jemboss/org
@dirrm share/EMBOSS/jemboss/lib
@dirrm share/EMBOSS/jemboss/images
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/soap
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/programs
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/parser/acd
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/parser
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/startup
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/sequenceChooser
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/form
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui/filetree
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss/gui
@dirrm share/EMBOSS/jemboss/api/org/emboss/jemboss
@dirrm share/EMBOSS/jemboss/api/org/emboss
@dirrm share/EMBOSS/jemboss/api/org
@dirrm share/EMBOSS/jemboss/api
@dirrm share/EMBOSS/jemboss
@dirrm share/EMBOSS/data/REBASE
@dirrm share/EMBOSS/data/PROSITE
@dirrm share/EMBOSS/data/PRINTS
@dirrm share/EMBOSS/data/CODONS
@dirrm share/EMBOSS/data
@dirrm share/EMBOSS/acd
@dirrm share/EMBOSS
Reference in New Issue View Git Blame Copy Permalink