Steve Wills 63d09c9c9b - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or ... RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned about for a while. PR: ports/168208 Approved by: portmgr (miwi)		2012-06-10 18:42:48 +00:00
..
adun	- fix build with gcc46	2012-02-07 05:36:27 +00:00
ariadne
artemis	Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,	2011-07-21 05:03:02 +00:00
avida	Set maintainership back to ports@	2012-06-03 12:14:38 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap	- Adjust BOINC_* variables to be consistent with new system in boinc-client	2012-05-16 13:46:30 +00:00
chemeq	Remove WWW entries from unmaintained ports that return 404 or where the domain	2011-08-02 20:58:23 +00:00
clustalw	Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since	2011-08-11 19:20:17 +00:00
consed
crux	Does not build on powerpc-9: error in pthreads.	2011-11-10 14:30:51 +00:00
dna-qc
dotter
embassy	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
emboss	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
fasta
fasta3	- remove maintainer tags from pkg-descr	2011-10-22 23:50:23 +00:00
fastdnaml	- Fix MASTER_SITES and WWW: line	2011-08-26 00:24:48 +00:00
finchtv
fluctuate
garlic
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps	- Update MASTER_SITES and WWW: line	2012-02-19 23:24:52 +00:00
gmap
gperiodic	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
grappa
hmmer
iolib	- Remove WITH_FBSD10_FIX, is no longer needed	2011-11-09 15:26:04 +00:00
jalview	Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,	2011-07-21 05:03:02 +00:00
lagan
lamarc	Set maintainership back to ports@	2012-06-03 12:14:38 +00:00
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden	The vast majority of pkg-descr files had the following format when they	2011-10-24 09:11:38 +00:00
mopac	- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)	2011-09-23 22:26:39 +00:00
mrbayes
mummer	- Update to 3.23	2012-01-17 00:51:39 +00:00
muscle
ncbi-toolkit	- remove maintainer tags from pkg-descr	2011-10-22 23:50:23 +00:00
njplot
ortep3
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene	- remove maintainer tags from pkg-descr	2011-10-22 23:50:23 +00:00
p5-Bio-Das	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-Das-Lite	- Fix missing DEPENDS to silence build warnings	2011-09-24 20:45:23 +00:00
p5-Bio-GFF3	- Update to 1.3	2012-04-26 10:37:09 +00:00
p5-Bio-Glite	At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450	2012-01-21 17:40:15 +00:00
p5-Bio-Graphics	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
p5-Bio-MAGETAB	- Update to 1.22	2012-02-09 03:28:51 +00:00
p5-Bio-NEXUS	- Update to 0.78	2012-02-11 02:04:41 +00:00
p5-Bio-Phylo	- Update to 0.49	2012-06-03 15:12:49 +00:00
p5-Bio-SCF	At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450	2012-01-21 17:40:15 +00:00
p5-bioperl	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
p5-bioperl-run	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon	The vast majority of pkg-descr files had the following format when they	2011-10-24 09:11:38 +00:00
povchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
primer3	- Respect CC	2012-01-27 17:41:00 +00:00
protomol	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
psi88
py-biopython	- Update to 1.59	2012-03-06 06:40:50 +00:00
pycogent	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
pyfasta	- Update to 0.4.5	2012-02-23 13:43:25 +00:00
pymol	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
python-nexus	- Update to 0.87	2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio
seaview	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
seqan	- Fix maintainer email	2012-06-07 13:04:53 +00:00
seqio
sim4
ssaha
t_coffee	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
tinker	- ${FFLAGS} might contain commas	2011-10-10 20:17:22 +00:00
treepuzzle
treeviewx	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
tRNAscan-SE
velvet	Update to 1.1.04	2011-06-09 16:33:21 +00:00
wise
xdrawchem	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
xmolwt	The vast majority of pkg-descr files had the following format when they	2011-10-24 09:11:38 +00:00
Makefile	SeqAn is an open source C++ library of efficient algorithms	2012-06-06 17:51:33 +00:00