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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/biology
2011-02-28 01:30:15 +00:00
..
adun
ariadne
artemis
avida Also broken on sparc64 (and, by implication, ia64). 2010-09-17 09:17:05 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap - Update the libmap instructions for amd64/8 2010-07-29 08:30:24 +00:00
chemeq
clustalw - Fix fetch 2010-12-21 00:12:22 +00:00
consed
crimap
crux
distribfold
dna-qc BROKEN should not be quoted. 2010-06-13 08:40:06 +00:00
dotter
embassy
emboss Sync to new bsd.autotools.mk 2010-12-04 07:34:27 +00:00
fasta
fasta3 - Update to 36.3.2 to fix distfile fetching on pointyhat 2011-01-26 20:26:36 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak
gff2ps
gmap - fix fetch: wget is not required for fetching 2010-12-12 08:10:05 +00:00
gperiodic
grappa
hmmer
iolib - Update to 1.12.5 2011-02-11 13:11:45 +00:00
jalview
kinemage
L-Breeder
lagan - Unbreak build: CPP is now part of MAKE_ENV 2010-11-08 15:05:11 +00:00
lamarc - Update to 2.1.5 2010-08-04 06:30:07 +00:00
libgenome Sync to new bsd.autotools.mk 2010-12-04 07:34:27 +00:00
libsbml - Update to 4.2.0 2010-10-08 02:06:53 +00:00
linux-foldingathome Improve port description. 2010-11-29 08:17:34 +00:00
lsysexp
mafft - Change depobj for fasta3 to something that does not change on fasta updates 2011-01-27 17:26:45 +00:00
mapm3
migrate - Add an additional MASTER_SITES 2010-10-01 01:06:46 +00:00
molden
mopac Sync to new bsd.autotools.mk 2010-12-04 07:34:27 +00:00
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base, 2010-09-21 07:56:43 +00:00
p5-Bio-Das-Lite - Update to 2.10 2010-11-04 06:24:22 +00:00
p5-Bio-Glite
p5-Bio-Graphics - Update to 2.18 2010-12-23 06:37:08 +00:00
p5-Bio-MAGETAB - Update to 1.13 2010-09-07 07:00:17 +00:00
p5-Bio-NEXUS - Use canonical format for FreeBSD.org MAINTAINER addresses 2010-12-25 16:55:41 +00:00
p5-Bio-Phylo - Update to 0.35 2011-02-28 01:30:15 +00:00
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml - Update to 4.4c 2010-09-08 00:16:45 +00:00
phd2fasta
phrap
phred
phylip
phyml Sync to new bsd.autotools.mk 2010-12-04 07:34:27 +00:00
platon - Unbreak the port; I'm not sure how it could possibly work before 2011-01-27 17:41:16 +00:00
povchem
primer3 - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed. 2010-12-29 20:04:42 +00:00
protomol
psi88
py-biopython - Move over to python2.5 or higher 2011-02-24 23:25:54 +00:00
pycogent - Update to 1.5.0 2010-11-10 08:52:26 +00:00
pyfasta - Update to 0.4.1 2010-12-02 13:42:09 +00:00
pymol Update to 1.3r1.3913. 2010-09-16 21:48:04 +00:00
python-nexus - Update to 0.8 2011-02-15 01:59:12 +00:00
rasmol
recombine
ruby-bio - Fix pkg-plist, got the wrong version before 2010-12-30 23:08:47 +00:00
seaview
seqio
sim4
ssaha
t_coffee
tinker - Update to 5.1.09 2011-01-31 11:45:44 +00:00
treepuzzle
treeviewx
tRNAscan-SE
velvet
wise Fix plist. 2010-11-16 23:55:41 +00:00
xdrawchem
xmolwt
Makefile