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50 lines
1.7 KiB
Makefile
50 lines
1.7 KiB
Makefile
# Created by: Akinori MUSHA aka knu <knu@idaemons.org>
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# $FreeBSD$
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PORTNAME= bio
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PORTVERSION= 1.4.1
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CATEGORIES= biology ruby
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MASTER_SITES= http://bioruby.org/archive/
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PKGNAMEPREFIX= ${RUBY_PKGNAMEPREFIX}
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DISTNAME= ${PORTNAME}ruby-${PORTVERSION}
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DIST_SUBDIR= ruby
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MAINTAINER= mauricio@arareko.net
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COMMENT= Integrated environment for Bioinformatics written in Ruby
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OPTIONS_DEFINE= XMLPARSER BDB4 MYSQL PGSQL DOCS
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XMLPARSER_DESC= xmlparser support for faster Blast processing
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BDB4_DESC= bdb4 support for faster flat file indexing
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OPTIONSFILE= ${PORT_DBDIR}/ruby-${PORTNAME}/options
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USES= shebangfix
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USE_RUBY= yes
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USE_RUBY_SETUP= yes
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SHEBANG_FILES= sample/biofetch.rb
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ruby_OLD_CMD= /usr/proj/bioruby/bin/ruby
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XML_PARSER_RUN_DEPENDS= ${RUBY_SITEARCHLIBDIR}/xmlparser.so:${PORTSDIR}/textproc/ruby-xmlparser
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BDB4_RUN_DEPENDS= ${RUBY_SITEARCHLIBDIR}/bdb.so:${PORTSDIR}/databases/ruby-bdb
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MYSQL_RUN_DEPENDS= rubygem-dbd-mysql>=0:${PORTSDIR}/databases/rubygem-dbd-mysql
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PGSQL_RUN_DEPENDS= rubygem-dbd-pg>=0:${PORTSDIR}/databases/rubygem-dbd-pg
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post-patch:
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${RUBY} -i -pe 'gsub(%r"(/etc/bioinformatics/)") { "${PREFIX}" + $$1 }' \
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${WRKSRC}/doc/Tutorial.rd \
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${WRKSRC}/lib/bio/io/registry.rb
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do-install:
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@${MKDIR} ${STAGEDIR}${PREFIX}/etc/bioinformatics
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.for f in etc/bioinformatics/seqdatabase.ini
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${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/${f}.sample
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.endfor
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@${MKDIR} ${STAGEDIR}${RUBY_MODEXAMPLESDIR}
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${CP} -R ${WRKSRC}/sample/ ${STAGEDIR}${RUBY_MODEXAMPLESDIR}/
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@${MKDIR} ${STAGEDIR}${RUBY_MODDOCDIR}/ja
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${INSTALL_DATA} ${WRKSRC}/ChangeLog ${WRKSRC}/README.rdoc ${STAGEDIR}${RUBY_MODDOCDIR}/
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${INSTALL_DATA} ${WRKSRC}/doc/*.rd ${STAGEDIR}${RUBY_MODDOCDIR}/
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${INSTALL_DATA} ${WRKSRC}/doc/*.rd.ja ${STAGEDIR}${RUBY_MODDOCDIR}/ja/
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.include <bsd.port.mk>
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