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mirror of https://git.FreeBSD.org/ports.git synced 2024-10-22 20:41:26 +00:00
freebsd-ports/science
John Marino 2ffeafe8fe science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate
These ports are due to be deleted in a couple of days because they use
gcc34.  I was curious if they actually specifically needed gcc34 or if
any recent gfortan would do.  The answer is these ports build fine with
USES+=fortran, which pulls in lang/gcc rather than the deprecated lang/gcc34.

The elmerpost port was broken on amd64; this is because it needs the -fPIC
flag.  I built it successfully in poudriere on FreeBSD 9.2, another platform
that supposed elmerpost can't build on.  I did not test i386, we'll see what
QAT says.

The listed maintainer has been unresponsive for months on many ports, so due
to the fact these two ports are scheduled for deletion on Dec 27, I am not
getting prior approval from maintainer.  The deprecation and expiration
settings are removed.
2013-12-26 02:47:52 +00:00
..
2d-rewriter
2dhf
abinit science/abinit: depends explicitly on "python" 2013-12-15 12:49:28 +00:00
afni
avogadro - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
bddsolve Convert LIB_DEPENDS for ports depending on boost 2013-12-12 14:15:03 +00:00
bft
bodr
brian
buddy Reset maintainer for llwang@infor.org 2013-12-18 10:38:33 +00:00
cdcl
cdf
cdo
cgnslib
checkmol
chemical-mime-data
chemtool
chemtool-devel science/chemtool-devel: Unbreak on FreeBSD 10+ 2013-12-25 22:08:13 +00:00
clhep
colt
crf++
dcl
devisor
dlpoly-classic
dtiquery
ecs
elmer-eio
elmer-hutiter
elmer-matc science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
elmer-meshgen2d
elmergrid
elmerpost science/elmer(post,-matc): Use modern fortran, unbreak, undeprecate 2013-12-26 02:47:52 +00:00
epte
euler
fastcap
fasthenry
felt
fisicalab
flounder
fvcom
fvcom-mpi
fvm
g3data
gamess uncomment MANUAL_PACKAGE_BUILD. 2013-11-29 01:45:50 +00:00
gchemutils Add patch to unbreak with libc++ 10.0+. 2013-12-03 22:10:25 +00:00
gdis
getdp
ghemical
ghmm
gnudatalanguage - Upgrade to 1.3.18. 2013-11-30 15:08:05 +00:00
gramps
gromacs - Update from 4.6.4 to 4.6.5 [1] 2013-12-17 20:36:38 +00:00
gsmc
gtamsanalyzer
gwyddion - Bump dependent ports' revisions (graphics/ilmbase and graphics/OpenEXR) 2013-11-20 14:25:28 +00:00
h5utils
harminv
hdf
hdf5
hdf5-18 - Fix PKGNAME collision 2013-12-11 18:38:53 +00:00
hdf-java - Convert to dos2unix.mk 2013-11-19 23:08:44 +00:00
hs-bio
InsightToolkit Now when it builds on 10.x, drop maintainership 2013-12-21 00:28:51 +00:00
isaac-cfd
jmol
jstrack
kalzium - Update from 1.1.0 to 1.1.1 2013-12-18 23:33:20 +00:00
kst2 Add patches to fix build on 10 and head 2013-12-09 15:08:42 +00:00
lamprop
libctl
libghemical
libint
libkml
liblinear
liboglappth
libquantum
libsvm
libsvm-python
linsmith
massxpert
mbdyn
mcstas
medit
meep
mei - Upgrade to 1.0.4; 2013-11-26 21:30:22 +00:00
minc
minc2 Mark as broken: does not build with newer hdf5 version: 2013-12-06 11:44:48 +00:00
mol2ps
mpb
mpqc
mpqc-mpich
ncs science/ncs: fix 'python' usage to remove implicity dependency of lang/python 2013-12-17 21:55:48 +00:00
netcdf
netcdf3-ftn
netcdf4 - Use CONFLICTS_INSTALL instead of CONFLICTS 2013-12-10 19:17:08 +00:00
netcdf-ftn - Remove LATEST_LINK 2013-12-10 19:18:39 +00:00
nifticlib
openbabel Add upstream patch to fix the build with libc++. 2013-11-13 15:49:25 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje
paraview Update freetype to 2.5.2. 2013-12-24 21:22:21 +00:00
peekabot Convert LIB_DEPENDS for ports depending on boost 2013-12-12 14:15:03 +00:00
pnetcdf
psi3
psychopy
py-coards
py-DendroPy
py-h5py science/py-h5py: update to 2.2.1 2013-12-13 19:59:42 +00:00
py-hcluster
py-mdp Reset maintainer for llwang@infor.org 2013-12-18 10:38:33 +00:00
py-mlpy
py-netCDF4 - Convert to dos2unix.mk 2013-11-19 23:08:44 +00:00
py-obspy - Fix build with distribute -> setuptools change 2013-11-27 19:21:00 +00:00
py-paida
py-pupynere
py-pyaixi science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm 2013-12-08 14:12:47 +00:00
py-pydap science/py-pydap: update to 3.1.1 2013-11-29 11:40:24 +00:00
py-pydicom
py-scikit-learn
py-scimath - Update WWW: 2013-11-20 20:51:25 +00:00
py-scipy - Fix distinfo 2013-11-18 15:36:42 +00:00
py-ws2300
pybrain
pycdf
pynn
pyteomics Update to 2.2.1 2013-11-29 11:57:18 +00:00
pyteomics.biolccc - Update WWW: 2013-11-20 20:51:25 +00:00
qcl
qtresistors - Convert to USES=qmake (and other USES while I'm here) 2013-11-22 12:55:00 +00:00
R-cran-AMORE Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-bayesm Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-DCluster Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-e1071 Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-eco Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-Epi Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-epicalc Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-snow Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
R-cran-som Add stage support to Mk/bsd.cran.mk and all USE_R_MOD ports (aka R-cran-*). 2013-11-27 18:56:43 +00:00
ruby-dcl
ruby-gphys
ruby-netcdf
rubygem-ai4r
silo - Update from 4.9 to 4.9.1 2013-12-18 23:27:40 +00:00
simlib
step
svmlight
szip
udunits
v_sim
veusz - Update to 1.19.1 2013-12-22 14:33:44 +00:00
vmd
voro++
x11iraf
xfce4-equake-plugin
xmakemol
xmds
Makefile science/py-pyaixi: Implementation of the MC-AIXI-CTW AI algorithm 2013-12-08 14:12:47 +00:00