mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-25 04:43:33 +00:00
e0edb73f9a
While here: * Update LICENSE handling * Move all commands to bin/ PR: 230169 Submitted by: ndowens.fbsd@yandex.com Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D16543
66 lines
1.6 KiB
Makefile
66 lines
1.6 KiB
Makefile
# Created by: Reed A. Cartwright <cartwright@asu.edu>
|
|
# $FreeBSD$
|
|
|
|
PORTNAME= bcftools
|
|
PORTVERSION= 1.9
|
|
CATEGORIES= biology
|
|
|
|
MAINTAINER= cartwright@asu.edu
|
|
COMMENT= Tools for manipulating next-generation sequencing data
|
|
|
|
LICENSE= MIT
|
|
LICENSE_FILE= ${WRKSRC}/LICENSE
|
|
|
|
BUILD_DEPENDS= htslib>=1.6:biology/htslib
|
|
LIB_DEPENDS= libhts.so:biology/htslib
|
|
TEST_DEPENDS= bash:shells/bash
|
|
|
|
CONFLICTS_BUILD=openssl
|
|
|
|
USES= autoreconf gmake localbase \
|
|
perl5 python:env shebangfix
|
|
|
|
USE_GITHUB= yes
|
|
GH_ACCOUNT= samtools
|
|
|
|
USE_LDCONFIG= ${PREFIX}/libexec/${PORTNAME}
|
|
USE_PERL5= test
|
|
GNU_CONFIGURE= yes
|
|
SHEBANG_FILES= misc/* test/test.pl
|
|
|
|
OPTIONS_DEFINE= GPL
|
|
GPL_DESC= Enable modules that rely on GPL code
|
|
OPTIONS_DEFAULT= GPL
|
|
|
|
GPL_LIB_DEPENDS= libgsl.so:math/gsl
|
|
|
|
.include <bsd.port.options.mk>
|
|
|
|
.if ${PORT_OPTIONS:MGPL}
|
|
MAKE_ENV+= USE_GPL=1
|
|
LICENSE+= GPLv3
|
|
LICENSE_COMB= multi
|
|
.endif
|
|
|
|
TEST_TARGET= test
|
|
|
|
post-patch:
|
|
@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' ${WRKSRC}/configure.ac
|
|
|
|
post-install:
|
|
${MV} ${STAGEDIR}${PREFIX}/bin/samtools_misc/color-chrs.pl \
|
|
${STAGEDIR}${PREFIX}/bin/color-chrs
|
|
${MV} ${STAGEDIR}${PREFIX}/bin/samtools_misc/guess-ploidy.py\
|
|
${STAGEDIR}${PREFIX}/bin/guess-ploidy
|
|
${MV} /${STAGEDIR}${PREFIX}/bin/samtools_misc/plot-roh.py \
|
|
${STAGEDIR}${PREFIX}/bin/plot-roh
|
|
${MV} ${STAGEDIR}${PREFIX}/bin/samtools_misc/run-roh.pl \
|
|
${STAGEDIR}${PREFIX}/bin/run-roh
|
|
${MV} ${STAGEDIR}${PREFIX}/bin/samtools_misc/vcfutils.pl \
|
|
${STAGEDIR}${PREFIX}/bin/vcfutils
|
|
${MV} ${STAGEDIR}${PREFIX}/bin/samtools_misc/plot-vcfstats \
|
|
${STAGEDIR}${PREFIX}/bin/
|
|
${RMDIR} ${STAGEDIR}${PREFIX}/bin/samtools_misc/
|
|
|
|
.include <bsd.port.mk>
|