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MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for FreeBSD, Linux, MacOS, and (via via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed.
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610 B
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11 lines
610 B
Plaintext
MMseqs2 (Many-against-Many sequence searching) is a software suite to search
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and cluster huge protein and nucleotide sequence sets. MMseqs2 is open source
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GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta
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version, via cygwin) Windows. The software is designed to run on multiple cores
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and servers and exhibits very good scalability. MMseqs2 can run 10000 times
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faster than BLAST. At 100 times its speed it achieves almost the same
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sensitivity. It can perform profile searches with the same sensitivity as
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PSI-BLAST at over 400 times its speed.
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WWW: https://github.com/soedinglab/MMseqs2
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