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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-04 01:24:52 +00:00
freebsd-ports/science
Raphael Kubo da Costa bb48e3761a Update to 2.1.
PR:		207453
Submitted by:	mp39590@gmail.com (maintainer)
2016-03-16 10:39:42 +00:00
..
2d-rewriter Cleanup GH_* and variables order. 2015-12-29 14:30:46 +00:00
afni Update to 2015.11.13. 2016-02-27 22:03:29 +00:00
avogadro - Fix build with boost 1.60 2016-02-08 19:15:59 +00:00
bddsolve
bft
bodr
brian - Update to 1.4.3 2016-03-04 02:06:45 +00:00
buddy
cdcl
cdf science/cdf: document ncurses requirement (USES+=ncurses) 2016-02-01 06:50:21 +00:00
cdo - Update to 1.7.1 2016-03-06 06:18:56 +00:00
cgnslib
cgribex
checkmol Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
chemical-mime-data
chemtool
chemtool-devel
clhep
colt
crf++
dcl
devisor - Switch to options helpers 2015-09-24 21:19:27 +00:00
dlpoly-classic - Update to 1.10.2 2016-02-06 13:45:05 +00:00
ecs
epte
fastcap
fasthenry
fisicalab Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
fvcom - Update maintainer mail address 2015-12-11 08:48:56 +00:00
fvcom-mpi - Update to 1.10.2 2016-02-06 13:45:05 +00:00
fvm
gchemutils
getdp - Update to 2.8.0. 2016-03-11 00:57:24 +00:00
ghemical Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
ghmm - Update to 0.9.r3 2015-09-18 06:16:31 +00:00
gnudatalanguage Upgrade to 0.9.6v2. 2016-01-07 20:48:42 +00:00
gramps graphics/py-graphviz: Move to py-pygraphviz, Fix 3.x build 2016-02-07 09:44:24 +00:00
grib_api
gromacs
gsmc
gtamsanalyzer Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
gwyddion - Update to 2.44 2016-01-15 15:37:21 +00:00
h5utils
harminv
hdf Reformat port description text and split it into three paragraphs to improve 2015-09-10 17:11:12 +00:00
hdf5 - Convert to new test framework 2015-10-01 15:56:04 +00:00
hs-bio
InsightToolkit Update to 4.9.0. 2016-02-12 11:41:39 +00:00
isaac-cfd
jmol Mark a few ports BROKEN: unfetchable 2015-11-09 12:59:03 +00:00
jstrack - Add empty directory to plist, sort plist 2015-09-09 14:53:30 +00:00
kalzium Change header installation location for kdelibs4-based ports. 2016-03-15 12:35:56 +00:00
kst2
lamprop
libctl
libghemical
libint - Update to version 1.1.6 2015-10-24 17:55:23 +00:00
libkml - Update BUILD_DEPENDS: remove redundant LOCALBASE/bin 2015-11-04 20:17:14 +00:00
liblinear science/liblinear: Update to version 2.1. 2016-03-09 16:44:37 +00:00
liboglappth Remove trailing whitespace from Makefiles, M-X. 2015-10-08 15:12:22 +00:00
libquantum Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
libsvm science/libsvm: Update to version 3.21. 2016-03-09 16:43:49 +00:00
libsvm-python
libxc Add a port of Libxc, a library of exchange-correlation functionals for 2015-10-26 10:10:10 +00:00
linsmith Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
massxpert Drop USES=iconv. 2015-09-11 09:43:07 +00:00
mbdyn
mcstas - Remove unneeded @dir's 2015-12-23 20:39:53 +00:00
mcstas-comps science/mcstats[-comps]: update 2.1 -> 2.2a 2015-11-12 02:29:59 +00:00
medit Fix ports that confused the meaning of WRKDIR and WRKSRC. 2015-11-05 12:36:25 +00:00
meep
mei
metaf2xml science/metaf2xml: update 1.57 -> 1.58 2016-01-04 13:49:17 +00:00
minc2
mol2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mpb
mpqc - Add missing manpage 2015-10-01 07:04:30 +00:00
mpqc-mpich - Add missing manpage 2015-10-01 07:04:30 +00:00
ncs
netcdf science/netcdf: document ncurses requirement (USES+=ncurses) 2016-01-30 22:45:36 +00:00
netcdf-cxx - Use USES=localbase 2015-10-19 20:21:01 +00:00
netcdf-fortran - Update to 4.4.3 2016-01-23 15:14:51 +00:00
nifticlib - Update maintainer mail address 2015-12-11 08:48:56 +00:00
openbabel
openkim - Update maintainer mail address 2015-12-11 08:48:56 +00:00
orthanc Update to 1.0.0. 2016-03-16 10:36:34 +00:00
orthanc-dicomweb Update to 0.2. 2016-03-16 10:38:08 +00:00
orthanc-postgresql Update to 2.0. 2016-03-16 10:38:52 +00:00
orthanc-webviewer Update to 2.1. 2016-03-16 10:39:42 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea - Add NO_ARCH 2015-10-03 17:11:36 +00:00
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS - Update to 0.105 2016-01-17 14:09:11 +00:00
p5-Mcstas-Tools Add new port p5-Mcstas-Tools, a general tool for simulating neutron scattering instruments and experiments 2015-11-20 23:34:39 +00:00
p5-PerlMol
p5-Physics-Unit Make it so that the default Perl is always called perl5. 2015-09-14 12:19:48 +00:00
paje Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source. 2015-09-19 10:33:34 +00:00
paraview
pnetcdf - Update to 1.10.2 2016-02-06 13:45:05 +00:00
psychopy - Update to 1.83.04 2016-02-16 02:01:07 +00:00
pulseview
py-cdo - Update to 1.3.0 2016-01-23 15:14:42 +00:00
py-coards
py-DendroPy Update to 4.0.3 2015-12-25 12:30:50 +00:00
py-h5py - Update to 2.5.0 2015-12-11 20:19:10 +00:00
py-hcluster - Add LICENSE 2015-09-14 12:20:09 +00:00
py-mdp
py-mlpy
py-netCDF4
py-obspy - Update to 0.10.2 2015-09-13 07:02:47 +00:00
py-paida
py-pupynere
py-pyaixi - Update to 1.0.4 2015-12-10 13:59:33 +00:00
py-pydap Deprecate ports broken for more than 6 months 2016-03-13 18:45:42 +00:00
py-pydicom
py-pysal science/py-pysal: Avoid interactive build possibility 2016-02-07 13:24:18 +00:00
py-pyteomics Rename my ports to comply with Python ports policy 2015-11-02 09:24:50 +00:00
py-pyteomics.biolccc Rename my ports to comply with Python ports policy 2015-11-02 09:24:50 +00:00
py-scikit-fuzzy Fuzzy logic toolkit for SciPy. 2015-12-31 13:41:14 +00:00
py-scikit-learn Update to version 0.17. 2015-12-07 12:05:17 +00:00
py-scikit-sparse
py-scimath
py-scipy - Update to 0.16.1 2015-11-09 18:44:23 +00:00
py-ws2300
pybrain - Update to 0.3.3 2016-01-19 05:56:29 +00:00
pycdf
pynn - Update to 0.8.0 2015-12-11 00:44:01 +00:00
qcl Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk - Add new port: science/R-cran-cmprsk 2015-11-08 05:46:50 +00:00
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.0 2016-01-26 01:48:17 +00:00
R-cran-epicalc
R-cran-etm - Add new port: science/R-cran-etm 2015-11-08 06:15:14 +00:00
R-cran-snow - Update to 0.4-1 2015-12-06 11:01:46 +00:00
R-cran-som
rubygem-ai4r
rubygem-cdo - Update to 1.3.0 2016-01-23 15:14:46 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simlib
simsmith
step
svmlight
szip - Convert to new test framework 2015-10-01 15:56:21 +00:00
udunits - Update to 2.2.20 2015-10-27 15:50:25 +00:00
v_sim
veusz
vmd
voro++ - Update maintainer mail address 2015-12-11 08:48:56 +00:00
xfce4-equake-plugin
xmakemol
Makefile Fuzzy logic toolkit for SciPy. 2015-12-31 13:41:14 +00:00