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9e5632dd66
freebsd-ports/biology
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Joe Marcus Clarke 9e5632dd66 Apply a big libtool patch to allow porters to use the libtool installed by 
the libtoolX ports instead of the one included with each port.  Ports that
set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of
the included version.  To restore previous behavior, use the new macro,
USE_INC_LIBTOOL_VER.  Both macros accept the same argument: a libtool version.

For example, to use the ports version of libtool-1.5, add the following to
your Makefile:

USE_LIBTOOL_VER=        15

To use the included version of libtool with extra hacks provided by
libtool-1.5, add the following to your Makefile:

USE_INC_LIBTOOL_VER=    15

With this change, ports that had to add additional libtool hacks to prevent
.la files from being installed or to fix certain threading issues can now
delete those hacks (after appropriate testing, of course).

PR:		63944
Based on work by:eik and marcus
Approved by:	ade (autotools maintainer)
Tested by:	kris on pointyhat
Bound to be hidden problems:	You bet
2004-07-09 17:43:11 +00:00
..
act SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ariadne Add ariadne 1.3, programs to compare protein sequences and 2004-06-22 14:29:59 +00:00
artemis SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
avida Add forgotten patches... 2004-05-21 13:24:56 +00:00
babel - Remove obsolete MASTER_SITES 2004-06-08 08:19:40 +00:00
biojava Add SIZE. 2004-01-27 20:51:07 +00:00
chemeq SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
clustalw
coalesce SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
crimap SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
deft SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
distribfold Drop maintainership 2004-06-24 14:28:12 +00:00
dna-qc BROKEN on alpha 5.x: does not compile 2004-02-23 03:54:36 +00:00
emboss Fix MASTER_SITES: 2004-06-23 08:20:21 +00:00
fasta Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3 2004-07-01 06:24:01 +00:00
fasta3 Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 2004-07-01 03:02:23 +00:00
fastdnaml Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
flip SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
fluctuate SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
garlic Make portlint happy by replacing space to tab 2004-05-06 19:49:54 +00:00
genpak Bump PORTREVISION on all ports that depend on gettext to aid with upgrading. 2004-02-04 05:21:48 +00:00
gff2ps [PATCH] biology/gff2ps distsite fix 2004-06-01 02:23:41 +00:00
gperiodic Fix build with gtk 2.4. 2004-04-05 12:59:13 +00:00
grappa SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
hmmer SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
kinemage SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
L-Breeder Chase the glib20 update, and bump all affected ports' PORTREVISIONs. 2004-04-05 03:31:02 +00:00
lamarc
libgenome Apply a big libtool patch to allow porters to use the libtool installed by 2004-07-09 17:43:11 +00:00
lsysexp Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDEN 2004-06-21 21:27:46 +00:00
migrate Update to 1.7.6.1. 2004-06-30 06:55:56 +00:00
molden BROKEN: Checksum mismatch 2004-06-20 08:40:40 +00:00
mopac [PATCH] biology/mopac patchsite fix 2004-06-01 08:07:15 +00:00
nab Update to 4.6 2004-07-02 09:53:25 +00:00
ncbi-toolkit
nclever SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ortep3 - Update MASTER_SITES 2004-06-02 03:32:57 +00:00
p5-AcePerl - Honor CFLAGS 2004-04-16 08:08:11 +00:00
p5-bioperl Add size data, approved by maintainers. 2004-03-18 18:01:13 +00:00
paml SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
phylip SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
platon - Update to last snapshot 2003-12-07 00:29:56 +00:00
povchem After patching, remove the carriage-return characters from povchem.c 2004-04-07 15:39:34 +00:00
primer3 SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
psi88 - Fix MASTER_SITES 2004-05-23 07:36:35 +00:00
py-biopython BROKEN: Does not build 2004-07-02 08:20:02 +00:00
pymol Make portlint happy by replacing space to tab 2004-05-06 19:49:54 +00:00
rasmol Replace explicit imake dependency with USE_IMAKE=yes 2004-06-18 03:36:32 +00:00
recombine SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
ruby-bio Fix distsite 2004-07-06 14:31:55 +00:00
seaview unbreak, only minor changes in the distfiles (see PR) 2004-05-18 14:59:02 +00:00
seqio SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
sim4 - Update to version 2003.09.21 2004-03-12 13:53:23 +00:00
spdbv - Remove long time unresponsive MASTER_SITE 2004-05-22 13:19:02 +00:00
t_coffee SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
tinker BROKEN: Checksum mismatch 2004-07-03 09:53:15 +00:00
treepuzzle SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
treeviewx Chase the glib20 update, and bump all affected ports' PORTREVISIONs. 2004-04-05 03:31:02 +00:00
tRNAscan-SE SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
wise SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
xdrawchem Add openbabel dependency (bento log forwarded by kris). 2004-04-09 00:59:36 +00:00
xmolwt SIZEify (maintainer timeout) 2004-03-31 03:12:58 +00:00
Makefile Add ariadne 1.3, programs to compare protein sequences and 2004-06-22 14:29:59 +00:00