Sunpoet Po-Chuan Hsieh 560f9c44ee - Fix typo ... Approved by: portmgr (blanket)		2015-10-10 23:15:16 +00:00
..
ariadne	6 ports categories: Remove $PTHREAD_LIBS	2015-03-24 16:01:21 +00:00
artemis	- Add empty directory to plist	2015-03-11 14:41:53 +00:00
avida	- Unbreak on PowerPC by using atomicops implementation for Linux and GCC	2015-09-02 12:29:09 +00:00
babel	Unbreak the build on PowerPC (at least) by always using va_copy() macro for	2015-09-02 10:10:06 +00:00
bcftools	New port: biology/bcftools	2015-06-05 21:01:13 +00:00
biococoa	Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.	2015-09-19 10:33:34 +00:00
biojava
blat
bwa	BWA is a program for aligning sequencing reads against a large reference	2015-09-25 18:39:36 +00:00
cd-hit	- Use compiler:openmp instead of gcc	2015-09-19 13:12:44 +00:00
cdbfasta	Fast indexing and retrieval of FASTA records from flat file data bases.	2015-09-25 18:37:24 +00:00
chemeq
clustalw	MASTER_SITES cleanup.	2015-05-14 10:15:04 +00:00
consed	${ENV} does not exist, it is called ${SETENV}.	2015-04-13 14:49:37 +00:00
crux	Unbreak the build on PowerPC, it had nothing to do with "error in pthreads":	2015-09-02 09:23:05 +00:00
emboss	Fix packaging as a user (pkg already takes care of credentials)	2015-03-18 21:52:19 +00:00
fasta	- Do not falsely advertise that PowerPC build runs out of space and fails	2015-09-02 10:35:25 +00:00
fasta3	- Update to 36.3.7a	2015-05-07 02:33:57 +00:00
fastdnaml
fastool	Simple and quick FastQ and FastA tool for file reading and conversion.	2015-09-25 18:35:14 +00:00
fasttree	FastTree infers approximately-maximum-likelihood phylogenetic trees from	2015-09-25 18:34:29 +00:00
fastx-toolkit	The FASTX-Toolkit is a collection of command line tools for Short-Reads	2015-09-25 18:33:18 +00:00
fluctuate	Remove $FreeBSD$ from patches files in categories a-j.	2015-05-22 13:34:20 +00:00
garlic
gff2ps	Convert ports to use the options helpers in categories [abc]*, and minor fixes.	2015-08-19 13:29:59 +00:00
gmap
gperiodic
grappa	biology/grappa: define license (GPLv2)	2015-09-25 18:55:08 +00:00
hmmer	- Remove deprecated option	2015-04-02 15:41:31 +00:00
htslib	Update ports in the [bcd]* categories to not use GH_COMMIT.	2015-05-06 15:16:53 +00:00
iolib	- Update to 1.14.4	2015-10-07 00:26:33 +00:00
jalview	Remove $FreeBSD$ from patches files in categories a-j.	2015-05-22 13:34:20 +00:00
lagan	- Fix shebangs	2015-06-11 10:17:24 +00:00
lamarc	Remove ansi version fo wxGTK 2.8 and only keep the unicode version	2015-09-16 19:51:26 +00:00
libgtextutils	Gordon's text utilities.	2015-09-25 18:31:28 +00:00
libsbml	Switch to USES=iconv:build.	2015-08-25 13:15:17 +00:00
linux-foldingathome
mafft	Use BROKEN helpers	2015-06-27 14:30:19 +00:00
mapm3
migrate	- Update options	2015-06-28 15:30:41 +00:00
molden
mopac
mrbayes
mummer	Fix build on mips by properly respecting compiler and flags	2015-08-05 12:18:41 +00:00
muscle
ncbi-blast+	- Unbreak	2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot	Mark as broken unfetchable ports	2015-04-05 17:55:35 +00:00
ortep3	Convert ports to use the options helpers in categories [abc]*, and minor fixes.	2015-08-19 13:29:59 +00:00
p5-AcePerl	Make it so that the default Perl is always called perl5.	2015-09-14 12:19:48 +00:00
p5-Bio-ASN1-EntrezGene	Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The	2015-06-24 15:16:23 +00:00
p5-Bio-Das
p5-Bio-Das-Lite	Remove TEST dependency on p5-Test-Simple when the version in core is	2015-02-26 16:54:41 +00:00
p5-Bio-GFF3	Make it so that the default Perl is always called perl5.	2015-09-14 12:19:48 +00:00
p5-Bio-Glite
p5-Bio-Graphics	Make it so that the default Perl is always called perl5.	2015-09-14 12:19:48 +00:00
p5-Bio-MAGETAB	Some OCD cleanups on some of the perl@ ports.	2015-03-12 23:00:02 +00:00
p5-Bio-NEXUS	Make it so that the default Perl is always called perl5.	2015-09-14 12:19:48 +00:00
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl	Make it so that the default Perl is always called perl5.	2015-09-14 12:19:48 +00:00
p5-bioperl-run	For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to	2015-03-20 20:07:50 +00:00
paml	Update biology/paml to 4.8a and unbreak.	2015-04-10 15:39:01 +00:00
phrap
phred
phylip	Unbreak	2015-07-28 17:52:11 +00:00
phyml
platon	Convert ports to use the options helpers in categories [abc]*, and minor fixes.	2015-08-19 13:29:59 +00:00
plink
plinkseq
povchem	Remove $FreeBSD$ from patches files in categories a-j.	2015-05-22 13:34:20 +00:00
primer3
protomol	Convert ports to use the options helpers in categories [abc]*, and minor fixes.	2015-08-19 13:29:59 +00:00
psi88	- Strip binaries	2015-06-03 17:27:08 +00:00
py-biopython	Update to 1.65.	2015-08-05 10:32:31 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio	- Fix typo	2015-10-10 23:15:16 +00:00
samtools	Update ports in the [bcd]* categories to not use GH_COMMIT.	2015-05-06 15:16:53 +00:00
seaview	biology/seaview: Update version 4.5.4.6=>4.5.4.7	2015-10-01 10:02:21 +00:00
seqan	biology/segan: Limit GCC to 4.8 while waiting for update	2015-03-21 11:53:27 +00:00
seqio
seqtools	biology/seqtools: 4.35 -> 4.36	2015-08-08 11:22:24 +00:00
sim4
ssaha
t_coffee	MASTER_SITES cleanup.	2015-05-14 10:15:04 +00:00
tinker	Convert ports to use the options helpers in categories [abc]*, and minor fixes.	2015-08-19 13:29:59 +00:00
treepuzzle
treeviewx	Remove ansi version fo wxGTK 2.8 and only keep the unicode version	2015-09-16 19:51:26 +00:00
tRNAscan-SE
ugene	biology/ugene: qt4-linguist -> qt4-linguisttools	2015-08-18 20:02:45 +00:00
velvet
wise
xmolwt	Fix previous commit.	2015-08-19 13:41:51 +00:00
Makefile	BWA is a program for aligning sequencing reads against a large reference	2015-09-25 18:39:36 +00:00