mirror of
https://git.FreeBSD.org/ports.git
synced 2024-11-24 00:45:52 +00:00
ec14a6f561
Fenner's porsurvey show wise no longer available at original site. Original site readme shows it has moved so update the MASTER_SITES accordingly. PR: ports/57154 Submmited by: Tony Maher <tonymaher@optushome.com.au>
97 lines
3.0 KiB
Makefile
97 lines
3.0 KiB
Makefile
# New ports collection makefile for: wise
|
|
# Date created: 26 February 2002
|
|
# Whom: Tony Maher <tonym@biolateral.com.au>
|
|
#
|
|
# $FreeBSD$
|
|
#
|
|
|
|
PORTNAME= wise
|
|
PORTVERSION= 2.2.0
|
|
CATEGORIES= biology
|
|
MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/
|
|
DISTNAME= ${PORTNAME}${PORTVERSION}
|
|
|
|
MAINTAINER= tonym@biolateral.com.au
|
|
COMMENT= Intelligent algorithms for DNA searches
|
|
|
|
WRKTOP= ${WRKDIR}/${DISTNAME}
|
|
WRKSRC= ${WRKTOP}/src
|
|
USE_REINPLACE= yes
|
|
MAKEFILE= makefile
|
|
|
|
#
|
|
# Actually want an 'ALL_TARGET = all perl' which then requires
|
|
# 'USE_PERL5= yes' but the perl sub-build is currently broken.
|
|
# The perl stuff is only so you can use the base libraries/functions
|
|
# from perl scripts. This is extra, independent functionality for the
|
|
# port and not required for the base system which are C applications.
|
|
# When the perl part is fixed, it will require an install line
|
|
# something like '@cd ${WRKSRC}/perl/Wise2; ${MAKE} install'
|
|
#
|
|
|
|
BINFILES= dba dnal estwise estwisedb genewise genewisedb \
|
|
genomewise psw pswdb
|
|
DATAFILES= BLOSUM30.bla BLOSUM45.bla BLOSUM62.bla BLOSUM80.bla \
|
|
aa.rnd blosum30.bla blosum62.bla cb.tmf codon.table \
|
|
gene.stat gon120.bla gon160.bla gon200.bla gon250.bla \
|
|
gon350.bla human.gf human.gp human.stats idenity.bla \
|
|
methods pb.gf pombe.gf tm.pri wise.2 wise.per worm.gf
|
|
DOCFILES= README apiend.tex appendix.tex dynamite.tex \
|
|
genewise21.eps genewise6.eps gettex.pl makefile \
|
|
wise2.tex wise2api.tex wise3arch.tex
|
|
EXFILES= README db.hmm hn_est.fa human.genomic \
|
|
keratin_intron.human keratin_intron.mouse pep.fa \
|
|
road.pep rrm.HMM vav.dna xeno.cdna xeno.pep
|
|
|
|
#
|
|
# Top level makefile does not respect CFLAGS. Fixing it means
|
|
# having to fix some of the sub-directory makefiles.
|
|
# Note: some makefiles are ok and know that '-c' does not belong
|
|
# in CFLAGS and are part of the rule.
|
|
#
|
|
|
|
post-configure:
|
|
@${REINPLACE_CMD} \
|
|
-e s'#^CFLAGS = -c -O#CFLAGS ?= -c -O#;' \
|
|
-e s'#\tcsh welcome.csh##;' \
|
|
${WRKSRC}/${MAKEFILE}
|
|
@${REINPLACE_CMD} \
|
|
-e s'#CFLAGS) $?#CFLAGS) -c $?#;' \
|
|
${WRKSRC}/base/${MAKEFILE}
|
|
@${REINPLACE_CMD} \
|
|
-e s'#INCFLAGS) $?#INCFLAGS) -c $?#;' \
|
|
${WRKSRC}/dynlibsrc/${MAKEFILE}
|
|
@${REINPLACE_CMD} \
|
|
-e s'#INCFLAGS) $?#INCFLAGS) -c $?#;' \
|
|
-e s'#CFLAGS) estwise.c#CFLAGS) -c estwise.c#;' \
|
|
-e s'#CFLAGS) estwiseb.c#CFLAGS) -c estwiseb.c#;' \
|
|
-e s'#CFLAGS) estwisedb.c#CFLAGS) -c estwisedb.c#;' \
|
|
-e s'#CFLAGS) genewise.c#CFLAGS) -c genewise.c#;' \
|
|
-e s'#CFLAGS) genewisedb.c#CFLAGS) -c genewisedb.c#;' \
|
|
${WRKSRC}/models/${MAKEFILE}
|
|
|
|
do-install:
|
|
.for file in ${BINFILES}
|
|
@${INSTALL_PROGRAM} ${WRKSRC}/bin/${file} ${PREFIX}/bin
|
|
.endfor
|
|
@${MKDIR} ${DATADIR}
|
|
.for file in ${DATAFILES}
|
|
@${INSTALL_DATA} ${WRKTOP}/wisecfg/${file} ${DATADIR}
|
|
.endfor
|
|
.if !defined(NOPORTDOCS)
|
|
@${MKDIR} ${DOCSDIR}
|
|
.for file in ${DOCFILES}
|
|
@${INSTALL_DATA} ${WRKTOP}/docs/${file} ${DOCSDIR}
|
|
.endfor
|
|
@${MKDIR} ${EXAMPLESDIR}
|
|
.for file in ${EXFILES}
|
|
@${INSTALL_DATA} ${WRKTOP}/test_data/${file} ${EXAMPLESDIR}
|
|
.endfor
|
|
|
|
.endif
|
|
|
|
post-install:
|
|
@${SED} -E -e 's#PREFIX#${PREFIX}#' -e '/(^\[|]$$)/d' ${PKGMESSAGE}
|
|
|
|
.include <bsd.port.mk>
|