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17 lines
705 B
Plaintext
17 lines
705 B
Plaintext
MAFFT offers a range of multiple alignment strategies, L-INS-i
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(accurate; recommended for <200 sequences), FFT-NS-i (standard speed and
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accuracy), FFT-NS-2 (fast; recommended for >2,000 sequences), etc.
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According to BAliBASE and other benchmark tests, L-INS-i is one of the
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most accurate methods currently available.
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MAFFT has been described:
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K. Katoh and H. Toh 2008 (Briefings in Bioinformatics 9:286-298)
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Recent developments in the MAFFT multiple sequence alignment program.
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K. Katoh, K. Misawa, K. Kuma and T. Miyata (Nucleic Acids Res. 30:
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3059-3066, 2002) MAFFT: a novel method for rapid multiple sequence
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alignment based on fast Fourier transform.
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WWW: http://mafft.cbrc.jp/alignment/software/
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