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Tobias C. Berner 369eb054b0 Qt4 deprecation: Remove Qt4 and its consumes. 
2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
2019-03-15 audio/qmpdclient: Qt4 has been EOL since december 2015
2019-03-15 audio/skype-call-recorder: Qt4 has been EOL since december 2015
2019-03-15 audio/virtual_oss_ctl: Qt4 has been EOL since december 2015
2019-03-15 biology/clustalx: Qt4 has been EOL since december 2015
2019-03-15 cad/klayout: Qt4 has been EOL since december 2015
2019-03-15 cad/layouteditor: Qt4 has been EOL since december 2015
2019-03-15 cad/leocad: Qt4 has been EOL since december 2015
2019-03-15 cad/meshlab: Qt4 has been EOL since december 2015
2019-03-15 cad/qfsm: Qt4 has been EOL since december 2015
2019-03-15 cad/qucs: Qt4 has been EOL since december 2015
2019-03-15 chinese/gcin-qt4: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-cn: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-tw: Qt4 has been EOL since december 2015
2019-03-15 chinese/qterm: Qt4 has been EOL since december 2015
2019-03-15 comms/dabstick-radio: Qt4 has been EOL since december 2015
2019-03-15 comms/hamfax: Qt4 has been EOL since december 2015
2019-03-15 comms/linpsk: Qt4 has been EOL since december 2015
2019-03-15 databases/py-qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-ibase-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-mysql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-odbc-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-pgsql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite3-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/sqliteman: Qt4 has been EOL since december 2015
2019-03-15 databases/tora: Qt4 has been EOL since december 2015
2019-03-15 deskutils/cdcat: Qt4 has been EOL since december 2015
2019-03-15 deskutils/fbreader: Qt4 has been EOL since december 2015
2019-03-15 deskutils/launchy: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qorganizer: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qrfcview: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qtm: Qt4 has been EOL since december 2015
2019-03-15 deskutils/tuxcards: Qt4 has been EOL since december 2015
2019-03-15 deskutils/vym: Qt4 has been EOL since december 2015
2019-03-15 devel/apiextractor: Qt4 has been EOL since december 2015
2019-03-15 devel/automoc4: Qt4 has been EOL since december 2015
2019-03-15 devel/edb: Qt4 has been EOL since december 2015
2019-03-15 devel/generatorrunner: Qt4 has been EOL since december 2015
2019-03-15 devel/grantlee: Qt4 has been EOL since december 2015
2019-03-15 devel/gwenhywfar-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/kaptain: Qt4 has been EOL since december 2015
2019-03-15 devel/ninja-ide: Qt4 has been EOL since december 2015
2019-03-12 devel/physfs-devel: is the same as devel/physfs, serving no purpose
2019-03-15 devel/piklab: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-core: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbussupport: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-help: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-test: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qbzr: Qt4 has been EOL since december 2015
2019-03-15 devel/qct: Qt4 has been EOL since december 2015
2019-03-15 devel/qdevelop: Qt4 has been EOL since december 2015
2019-03-15 devel/qprog: Qt4 has been EOL since december 2015
2019-03-15 devel/qross: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant-adp: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-corelib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-help-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-libqtassistantclient: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguist: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguisttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-makeqpf: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-moc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-porting: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdbusviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdoc3: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmake: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmlviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qt3support: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-singleapplication: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-soap: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qvfb: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-rcc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-testlib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic3: Qt4 has been EOL since december 2015
2019-03-15 devel/qtscriptgenerator: Qt4 has been EOL since december 2015
2019-03-15 devel/shiboken: Qt4 has been EOL since december 2015
2019-03-15 devel/subcommander2: Qt4 has been EOL since december 2015
2019-03-15 devel/universalindentgui: Qt4 has been EOL since december 2015
2019-03-15 editors/leo: Qt4 has been EOL since december 2015
2019-03-15 editors/lfhex: Qt4 has been EOL since december 2015
2019-03-15 editors/plume-creator-devel: Qt4 has been EOL since december 2015
2019-03-15 editors/textroom: Qt4 has been EOL since december 2015
2019-03-15 editors/yzis: Qt4 has been EOL since december 2015
2019-03-15 emulators/dboxfe: Qt4 has been EOL since december 2015
2019-03-15 emulators/q4wine: Qt4 has been EOL since december 2015
2019-03-15 emulators/qtemu: Qt4 has been EOL since december 2015
2019-03-15 emulators/swine: Qt4 has been EOL since december 2015
2019-03-15 finance/alkimia-qt4: Qt4 has been EOL since december 2015
2019-03-15 finance/bitcoin-armory: Qt4 has been EOL since december 2015
2019-03-15 finance/qhacc: Qt4 has been EOL since december 2015
2019-03-15 ftp/scythia: Qt4 has been EOL since december 2015
2019-03-15 games/bubble-chains: Qt4 has been EOL since december 2015
2019-03-15 games/capicity: Qt4 has been EOL since december 2015
2019-03-15 games/capitalism: Qt4 has been EOL since december 2015
2019-03-15 games/flukz: Qt4 has been EOL since december 2015
2019-03-15 games/goldencheetah: Qt4 has been EOL since december 2015
2019-03-15 games/jag: Qt4 has been EOL since december 2015
2019-03-15 games/kardsgt: Qt4 has been EOL since december 2015
2019-03-15 games/kcheckers: Qt4 has been EOL since december 2015
2019-03-15 games/openpref: Qt4 has been EOL since december 2015
2019-03-15 games/pokerth: Qt4 has been EOL since december 2015
2019-03-15 games/qgo: Qt4 has been EOL since december 2015
2019-03-15 games/qtads: Qt4 has been EOL since december 2015
2019-03-15 games/quackle: Qt4 has been EOL since december 2015
2019-03-15 games/spellathon: Qt4 has been EOL since december 2015
2019-03-15 games/sudoku-sensei: Qt4 has been EOL since december 2015
2019-03-15 games/tbe: Qt4 has been EOL since december 2015
2019-03-15 games/xptools: Qt4 has been EOL since december 2015
2019-03-15 german/tipp10: Qt4 has been EOL since december 2015
2019-03-15 graphics/appleseed: Qt4 has been EOL since december 2015
2019-03-15 graphics/aqsis: Qt4 has been EOL since december 2015
2019-03-15 graphics/autoq3d: Qt4 has been EOL since december 2015
2019-03-15 graphics/burplex: Qt4 has been EOL since december 2015
2019-03-15 graphics/darknock: Qt4 has been EOL since december 2015
2019-03-15 graphics/djview4-qt4: Qt4 has been EOL since december 2015
2019-03-15 graphics/easypaint: Qt4 has been EOL since december 2015
2019-03-15 graphics/eos-movrec: Qt4 has been EOL since december 2015
2019-03-15 graphics/gle-graphics: Qt4 has been EOL since december 2015
2019-03-15 graphics/lprof-devel: Qt4 has been EOL since december 2015
2019-03-15 graphics/luminance: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender14: Qt4 has been EOL since december 2015
2019-03-15 graphics/meshviewer: Qt4 has been EOL since december 2015
2019-03-15 graphics/natron: Qt4 has been EOL since december 2015
2019-03-15 graphics/oyranos: Qt4 has been EOL since december 2015
2019-03-15 graphics/pencil: Qt4 has been EOL since december 2015
2019-03-15 graphics/prison: Qt4 has been EOL since december 2015
2019-03-15 graphics/py-qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-iconengines: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-imageformats: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-pixeltool: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qxv: Qt4 has been EOL since december 2015, qxv is unmaintained
2019-03-15 graphics/scantailor: Qt4 has been EOL since december 2015
2019-03-15 graphics/seexpr: Qt4 has been EOL since december 2015
2019-03-15 graphics/smillaenlarger: Qt4 has been EOL since december 2015
2019-03-15 graphics/structuresynth: Qt4 has been EOL since december 2015
2019-03-15 graphics/yagf: Qt4 has been EOL since december 2015
2019-03-15 japanese/qt4-codecs-jp: Qt4 has been EOL since december 2015
2019-03-15 korean/qt4-codecs-kr: Qt4 has been EOL since december 2015
2019-03-15 mail/qgmailnotifier: Qt4 has been EOL since december 2015
2019-03-15 math/qtiplot: Qt4 has been EOL since december 2015
2019-03-15 math/qtoctave: Qt4 has been EOL since december 2015
2019-03-15 math/qwtplot3d-qt4: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-demo: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qmetro: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-l10n: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtconfig: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtdemo: Qt4 has been EOL since december 2015
2019-03-15 misc/saaghar: Qt4 has been EOL since december 2015
2019-03-15 multimedia/2mandvd: Qt4 has been EOL since december 2015
2019-03-15 multimedia/abby: Qt4 has been EOL since december 2015
2019-03-15 multimedia/avidemux-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/gstreamer-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mediadownloader: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mlt-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/phonon-xine: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-phonon: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp-plugin-pack: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-mobility: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/umplayer: Qt4 has been EOL since december 2015
2019-03-15 net/avahi-qt4: Qt4 has been EOL since december 2015
2019-03-15 net/cagibi: Qt4 has been EOL since december 2015
2019-03-15 net/hupnp: Qt4 has been EOL since december 2015
2019-03-15 net/ostinato: Qt4 has been EOL since december 2015
2019-03-15 net/py-qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qjsonrpc: Qt4 has been EOL since december 2015
2019-03-15 net/qoauth: Qt4 has been EOL since december 2015
2019-03-15 net/qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qtweetlib: Qt4 has been EOL since december 2015
2019-03-15 net-im/libjreen: Qt4 has been EOL since december 2015
2019-03-15 net-im/psimedia: Qt4 has been EOL since december 2015
2019-03-15 net-im/ramblercontacts: Qt4 has been EOL since december 2015
2019-03-15 net-im/telepathy-logger-qt4: Qt4 has been EOL since december 2015
2019-03-15 net-im/turpial: Qt4 has been EOL since december 2015
2019-03-15 net-im/vacuum-im: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/nagiosagent: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/qkismet: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/bitmessage: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/eiskaltdcpp-qt: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/valknut: Qt4 has been EOL since december 2015
2019-03-15 polish/qfaktury: Qt4 has been EOL since december 2015
2019-03-15 print/kpdftool: Qt4 has been EOL since december 2015
2019-03-15 print/scribus: Qt4 has been EOL since december 2015
2019-03-15 science/MOOSE-neural-simulator: Qt4 has been EOL since december 2015
2019-03-15 science/avogadro: Qt4 has been EOL since december 2015
2019-03-15 science/openstructure: Qt4 has been EOL since december 2015
2019-03-15 science/py-veusz: Qt4 has been EOL since december 2015
2019-03-15 science/qtresistors: Qt4 has been EOL since december 2015
2019-03-15 security/keepassx2: Qt4 has been EOL since december 2015
2019-03-15 security/kqoauth: Qt4 has been EOL since december 2015
2019-03-15 security/tpmmanager: Qt4 has been EOL since december 2015
2019-03-15 sysutils/android-file-transfer-qt4: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bacula9-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/policykit-qt: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qpxtool: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qsynergy: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qzeitgeist: Qt4 has been EOL since december 2015
2019-03-15 sysutils/searchmonkey: Qt4 has been EOL since december 2015
2019-03-15 sysutils/unetbootin: Qt4 has been EOL since december 2015
2019-03-15 textproc/beediff: Qt4 has been EOL since december 2015
2019-03-15 textproc/dixit: Qt4 has been EOL since december 2015
2019-03-15 textproc/goldendict: Qt4 has been EOL since december 2015
2019-03-15 textproc/ibus-qt: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-clucene: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns-tool: Qt4 has been EOL since december 2015
2019-03-15 textproc/scim-bridge-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/uim-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/xxdiff: Qt4 has been EOL since december 2015
2019-03-15 www/aria2fe: Qt4 has been EOL since december 2015
2019-03-15 www/cutycapt: Qt4 has been EOL since december 2015
2019-03-15 www/py-qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qupzilla-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11/leechcraft: Qt4 has been EOL since december 2015
2019-03-15 x11/py-qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qimageblitz: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-graphicssystems-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-inputmethods: Qt4 has been EOL since december 2015
2019-03-15 x11/qxkb: Qt4 has been EOL since december 2015
2019-03-15 x11-fonts/fontmatrix: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-float: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-phase: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-quantumstyle: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qtcurve-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/attica: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/py-qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4pas: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/soqt: Qt4 has been EOL since december 2015
2019-03-15 x11-wm/qlwm: Qt4 has been EOL since december 2015

Approved by:	portmgr (implicit)
2019-03-16 21:55:51 +00:00
..
abyss New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end sequence assembler 2019-02-25 07:56:45 +00:00
artemis biology/artemis: Update 9 -> 17.0.1-11 2018-06-11 17:45:56 +00:00
avida Change cmake default behaviour to outsource. 2018-12-25 20:25:39 +00:00
babel
bamtools Change cmake default behaviour to outsource. 2018-12-25 20:25:39 +00:00
bcftools biology/bcftools: update to 1.9 2018-08-02 19:30:57 +00:00
bedtools biology/bedtools: unbreak with libc++ 8 2019-03-04 06:55:08 +00:00
biococoa Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
bowtie Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
bowtie2 Update devel/tbb to version 2019.1 and bump dependent ports' revisions 2018-10-11 14:47:13 +00:00
bwa
canu Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
cd-hit biology/cd-hit: Upgrade to 4.8.1 2019-03-14 23:59:47 +00:00
cdbfasta
checkm biology/checkm: Update 1.0.12 -> 1.0.13 2019-02-09 22:58:09 +00:00
chemeq
clustal-omega biology/clustal-omega: Multiple alignment of nucleic acid and protein, replaces clustalw 2018-05-21 22:15:26 +00:00
clustalw biology/clustalw: Fix license, take maintainership 2018-05-21 01:13:40 +00:00
consed
cytoscape biology/cytoscape: Fix license 2018-08-12 06:29:51 +00:00
ddocent Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
diamond biology/diamond: Update to version 0.9.24 2018-12-31 19:00:00 +00:00
dsr-pdb biology/dsr-pdb: Correct typo 2019-02-05 19:01:59 +00:00
emboss
exonerate New port: biology/exonerate: Generic tool for sequence alignment 2018-07-13 07:02:16 +00:00
fasta
fasta3
fastahack biology/fastahack: Utility for indexing and sequence extraction from FASTA files 2018-04-16 14:50:46 +00:00
fastdnaml
fastool
fastqc
fasttree Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
fastx-toolkit biology/fastx-toolkit: Fix build on FreeBSD 12 2018-05-16 15:13:43 +00:00
figtree New port: biology/figtree: Graphical viewer of phylogenetic trees 2019-02-03 21:14:38 +00:00
fluctuate
freebayes Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
garlic
gatk devel/gradle: Update to 5.0 2018-12-04 17:53:46 +00:00
gff2ps biology/gff2ps: update 0.98d to 0.98l 2018-12-19 17:34:29 +00:00
gmap
gperiodic
graphlan New port: biology/graphlan: High-quality circular representations of taxonomic, phylogenetic trees 2019-02-03 20:13:26 +00:00
grappa
groopm biology/groopm fails to build with python3 2019-01-07 09:44:42 +00:00
hisat2 New port: biology/hisat2: Program for mapping next-generation sequencing reads 2019-01-11 16:02:05 +00:00
hmmer vec_splats function is not supported by base GCC. Add USES=compiler:c11 2019-02-18 01:30:24 +00:00
htslib biology/htslib: update to 1.9 2018-08-02 19:27:13 +00:00
hyphy Change cmake default behaviour to outsource. 2018-12-25 20:25:39 +00:00
igv biology/igv: Update 2.4.16 -> 2.4.19 2019-02-23 21:23:51 +00:00
infernal Allow building on powerpc64. 2018-09-27 23:02:56 +00:00
iolib Remove the incorrect typedefs to fix build on tier-2. 2018-11-05 19:45:23 +00:00
iqtree biology/iqtree: Update to version 1.6.10 2019-02-21 14:33:43 +00:00
jalview
jellyfish Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
kallisto kallisto: Upgrade to 0.45.1, unbundle hstlib 2019-02-24 20:32:19 +00:00
lagan
lamarc biology/lamarc: Fix build with Clang 6 2018-08-25 03:13:37 +00:00
libgtextutils
libsbml Change cmake default behaviour to outsource. 2018-12-25 20:25:39 +00:00
linux-foldingathome biology/linux-foldingathome: reset maintainer by request 2018-07-27 02:19:43 +00:00
mafft
mapm3
migrate
molden Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
mopac Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
mrbayes
mummer Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
muscle
ncbi-blast+ Update dns/libidn2 to 2.1.1 2019-02-09 23:25:36 +00:00
ncbi-cxx-toolkit Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
ncbi-toolkit Update dns/libidn2 to 2.1.1 2019-02-09 23:25:36 +00:00
ngs-sdk biology/ngs-sdk: Update 2.9.3 -> 2.9.4 2019-02-23 21:55:55 +00:00
p5-AcePerl Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-ASN1-EntrezGene Update to 1.73 2018-10-10 10:23:10 +00:00
p5-Bio-Cluster Add p5-Bio-Cluster 1.7.3 2019-02-20 20:46:37 +00:00
p5-Bio-Coordinate Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-Das Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-Das-Lite Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-FeatureIO Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-GFF3 Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-Glite Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-Graphics Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-MAGETAB Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-NEXUS Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-Phylo Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-Bio-SCF Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except 2018-10-06 13:06:42 +00:00
p5-BioPerl Update to 1.007005 (1.7.5) 2019-02-22 19:54:12 +00:00
p5-BioPerl-Run Update to 1.007003 2019-02-20 20:46:58 +00:00
p5-transdecoder Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
p5-TrimGalore
paml biology/paml: Update to version 4.9i 2019-02-26 15:12:42 +00:00
pbbam biology/pbbam: Upgrade to 0.18.0 release 2019-02-19 23:03:41 +00:00
pbcopper biology/pbcopper: Upgrade to 0.4.1 release 2019-02-19 22:20:11 +00:00
pbseqan biology/pbseqan: Mark deprecated 2019-02-20 01:53:35 +00:00
pear-merger Mark as broken on aarch64, and, where appropriate, armvX. 2018-06-21 23:52:37 +00:00
phrap Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
phred Add DOCS options to ports that should have one. 2018-09-10 13:14:50 +00:00
phylip
phyml Change 4 ports from net/mpich2 to net/mpich 2018-09-22 18:00:24 +00:00
plinkseq
primer3 biology/primer3: Fix build with Clang 6 2018-08-25 03:35:46 +00:00
prodigal New port: biology/prodigal: Protein-coding gene prediction for prokaryotic genomes 2019-02-03 18:08:14 +00:00
prodigy-lig New port: biology/prodigy-lig: Prediction of protein-small molecule binding affinities 2019-02-03 18:49:23 +00:00
protomol biology/protomol: Fix doubled USES overwriting the old value 2018-08-25 03:47:25 +00:00
psi88 Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
py-biom-format Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
py-biopython - Update to 1.73 2018-12-22 04:54:51 +00:00
py-bx-python Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
py-cutadapt biology/py-cutadapt: Upgrade to 1.18 2018-09-20 14:10:52 +00:00
py-fastTSNE New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNE 2018-12-15 08:58:05 +00:00
py-Genesis-PyAPI Use PY_FLAVOR for dependencies. 2018-06-20 17:05:41 +00:00
py-gffutils New port: biology/py-gffutils: Work with GFF and GTF files in a flexible database framework 2018-10-19 02:06:53 +00:00
py-gtfparse Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
py-loompy biology/py-loompy: Update 2.0.16 -> 2.0.17 2019-02-02 21:38:48 +00:00
py-macs2 Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
py-orange3-bioinformatics Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-orange3-single-cell Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-pyfaidx biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2 2018-10-28 04:34:14 +00:00
py-pysam biology/py-pysam: Update 0.15.1 -> 0.15.2 2019-01-26 04:15:54 +00:00
pycogent Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
pyfasta - Update WWW 2019-02-07 09:30:40 +00:00
python-nexus - Update to 1.63 2018-09-22 08:54:58 +00:00
rainbow
recombine
ruby-bio
rubygem-bio Update to 1.5.2 2018-09-21 18:08:24 +00:00
samtools biology/samtools: update to 1.9 2018-08-02 19:28:36 +00:00
seaview biology/seaview: Fix build with Clang 6 2018-09-08 09:01:35 +00:00
seqan
seqan1
seqan-apps Change cmake default behaviour to outsource. 2018-12-25 20:25:39 +00:00
seqio
seqtk
seqtools biology/seqtools: fix build on current, if lld is lld7 2019-01-07 19:54:40 +00:00
sim4
slclust
smithwaterman biology/smithwaterman: Smith-waterman-gotoh alignment algorithm 2018-04-15 17:45:52 +00:00
stacks biology/stacks: Upgrade to 2.3 2019-01-12 15:53:00 +00:00
stringtie New port: biology/stringtie: Transcript assembly and quantification for RNA-seq 2018-07-11 21:32:39 +00:00
t_coffee Bump PORTREVISION for ports depending on the canonical version of GCC 2018-12-12 01:35:33 +00:00
tabixpp biology/tabixpp: C++ wrapper to tabix indexer 2018-04-14 23:52:16 +00:00
treepuzzle
trimadap Mark as broken on aarch64, and, where appropriate, armvX. 2018-06-21 23:52:37 +00:00
trimmomatic
tRNAscan-SE - Unbreak by adding missing pkg-plist 2018-09-28 00:12:48 +00:00
ugene Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
unanimity biology/unanimity: Upgrade to 3.4.1 2019-02-24 16:04:58 +00:00
vcflib Mark these ports as broken on aarch64. 2018-06-22 00:03:08 +00:00
vcftools biology/vcftools: Update to 0.1.16, a security release 2018-08-04 01:29:29 +00:00
velvet
wise
Makefile Qt4 deprecation: Remove Qt4 and its consumes. 2019-03-16 21:55:51 +00:00