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mirror of https://git.FreeBSD.org/ports.git synced 2024-12-23 04:23:08 +00:00
freebsd-ports/biology
Martin Wilke 4e4a5fc43b - Update to 0.982
PR:		138264
Submitted by:	Wen Heping <wenheping@gmail.com> (maintainer)
2009-08-28 23:36:45 +00:00
..
adun - fix PORTSCOUT 2009-07-06 07:29:12 +00:00
ariadne
artemis
avida - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap
chemeq
clustalw
consed
crimap
crux Fix PKGORIGIN 2009-08-08 13:26:13 +00:00
distribfold
dna-qc
dotter - BROKEN checksum mismatch 2009-08-22 08:45:12 +00:00
embassy - Update MASTER_SITES 2009-08-14 08:33:22 +00:00
emboss - Update MASTER_SITES 2009-08-14 08:33:22 +00:00
fasta
fasta3 Update to 35.4.9 2009-08-23 15:47:37 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
gff2ps
gmap
gperiodic - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
grappa
hmmer
iolib Io_lib is a library of file reading and writing code to provide a 2009-08-28 23:34:20 +00:00
jalview
kinemage
L-Breeder - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
lagan
lamarc
libgenome -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
libsbml - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
linux-foldingathome
lsysexp - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
mafft
mapm3
migrate
molden - Unbreak fetch 2009-08-02 19:59:03 +00:00
mopac - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
mrbayes
mummer - Update to 3.21. 2009-08-28 14:52:05 +00:00
muscle
ncbi-toolkit
njplot
ortep3
p5-AcePerl - Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFE 2009-07-07 22:11:07 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Update to 1.12 2009-08-27 20:34:58 +00:00
p5-Bio-Glite
p5-Bio-Graphics - Update to 0.982 2009-08-28 23:36:45 +00:00
p5-Bio-MAGETAB Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plists 2009-07-30 23:04:49 +00:00
p5-Bio-NEXUS Bio::NEXUS package provides an object-oriented, Perl-based 2009-08-22 20:39:51 +00:00
p5-Bio-Phylo - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-Bio-SCF Bio::SCF module allows you to read and update (in a restricted 2009-08-28 23:36:09 +00:00
p5-bioperl - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-bioperl-run - Relax check on bioperl version; people keep forgetting to update this check 2009-08-02 20:00:08 +00:00
paml - Update to 4.3 2009-08-13 17:00:04 +00:00
phd2fasta
phrap
phred
phylip
phyml PhyML is a software that estimates maximum likelihood phylogenies from 2009-07-21 01:10:13 +00:00
platon
povchem
primer3
protomol - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
psi88
py-biopython
pycogent - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
pymol
rasmol
recombine
ruby-bio
seaview - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
seqio
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
tRNAscan-SE
wise
xdrawchem - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
xmolwt
Makefile Bio::SCF module allows you to read and update (in a restricted 2009-08-28 23:36:09 +00:00