Ade Lovett 4a8684e352 Sync to new bsd.autotools.mk		2010-12-04 07:34:27 +00:00
..
adun	LICENSE GPLv2	2010-06-05 19:53:32 +00:00
ariadne
artemis
avida	Also broken on sparc64 (and, by implication, ia64).	2010-09-17 09:17:05 +00:00
babel	Mark various ports as broken or ignore on powerpc.	2010-04-01 05:16:19 +00:00
belvu
biococoa	LICENSE LGPL21	2010-06-05 06:14:28 +00:00
biojava	- Update to 1.7	2009-05-01 09:33:42 +00:00
blast	- SUB_FILES += pkg-message	2010-01-09 23:51:26 +00:00
blat
boinc-simap	- Update the libmap instructions for amd64/8	2010-07-29 08:30:24 +00:00
chemeq
clustalw	- Update to 2.1	2010-11-22 00:15:25 +00:00
consed	Welcome to the new linux ports infrastructure which allows using	2009-03-19 17:28:51 +00:00
crimap	- actually remove old patch	2010-01-17 00:16:34 +00:00
crux	Update to Crux 1.2.0.	2009-09-19 17:58:13 +00:00
distribfold
dna-qc	BROKEN should not be quoted.	2010-06-13 08:40:06 +00:00
dotter	- Removed BROKEN because file fetches and checksums correctly	2010-04-28 22:37:11 +00:00
embassy	- Update to 6.2.0	2010-04-07 01:21:36 +00:00
emboss	Sync to new bsd.autotools.mk	2010-12-04 07:34:27 +00:00
fasta	Mark various ports as broken or ignore on powerpc.	2010-04-01 05:16:19 +00:00
fasta3	Update to 35.4.9	2009-08-23 15:47:37 +00:00
fastdnaml
finchtv
fluctuate	For ports maintained by ports@FreeBSD.org, remove names and/or	2009-12-21 02:19:12 +00:00
garlic
genpak	- update to 1.4.1	2010-03-28 06:47:48 +00:00
gff2ps
gmap	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
gperiodic	Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.	2010-05-31 02:01:56 +00:00
grappa
hmmer	- Update download locations, update WWW	2009-02-01 08:17:14 +00:00
iolib	Sync to new bsd.autotools.mk	2010-12-04 07:34:27 +00:00
jalview
kinemage
L-Breeder	- update to 1.4.1	2010-03-28 06:47:48 +00:00
lagan	- Unbreak build: CPP is now part of MAKE_ENV	2010-11-08 15:05:11 +00:00
lamarc	- Update to 2.1.5	2010-08-04 06:30:07 +00:00
libgenome	Sync to new bsd.autotools.mk	2010-12-04 07:34:27 +00:00
libsbml	- Update to 4.2.0	2010-10-08 02:06:53 +00:00
linux-foldingathome	Improve port description.	2010-11-29 08:17:34 +00:00
lsysexp	- update to 1.4.1	2010-03-28 06:47:48 +00:00
mafft	- Update download locations, update WWW	2009-02-04 03:31:00 +00:00
mapm3	- Mark MAKE_JOBS_UNSAFE	2009-11-20 22:53:09 +00:00
migrate	- Add an additional MASTER_SITES	2010-10-01 01:06:46 +00:00
molden	Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now	2009-09-13 00:08:01 +00:00
mopac	Sync to new bsd.autotools.mk	2010-12-04 07:34:27 +00:00
mrbayes	Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from	2009-05-12 11:28:17 +00:00
mummer	- Update to 3.22	2010-03-21 17:18:20 +00:00
muscle
ncbi-toolkit	- use $SUB_FILES to dynamically adjust pkg-message	2010-01-31 03:42:20 +00:00
njplot	Convert most of remaining ports that depend on xorg-libraries to	2009-06-09 15:33:28 +00:00
ortep3	For ports maintained by ports@FreeBSD.org, remove names and/or	2009-12-21 02:19:12 +00:00
p5-AcePerl	- Remove unneeded dependencies which is in perl-5.8.9 dist	2010-01-29 14:52:21 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,	2010-09-21 07:56:43 +00:00
p5-Bio-Das-Lite	- Update to 2.10	2010-11-04 06:24:22 +00:00
p5-Bio-Glite	- Remove unneeded dependencies which is in perl-5.8.9 dist	2010-01-29 14:52:21 +00:00
p5-Bio-Graphics	- Also remove them from pkg-plist lists not from me that crept in	2010-11-24 06:19:46 +00:00
p5-Bio-MAGETAB	- Update to 1.13	2010-09-07 07:00:17 +00:00
p5-Bio-NEXUS	- Update to 0.76	2010-09-25 08:14:02 +00:00
p5-Bio-Phylo	- Update to 0.31	2010-11-22 08:50:39 +00:00
p5-Bio-SCF	- Update to 1.03	2010-01-09 01:21:21 +00:00
p5-bioperl	- update to 1.4.1	2010-03-28 06:47:48 +00:00
p5-bioperl-run	- update to 1.4.1	2010-03-28 06:47:48 +00:00
paml	- Update to 4.4c	2010-09-08 00:16:45 +00:00
phd2fasta
phrap
phred
phylip	For ports maintained by ports@FreeBSD.org, remove names and/or	2009-12-21 02:19:12 +00:00
phyml	Sync to new bsd.autotools.mk	2010-12-04 07:34:27 +00:00
platon	Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now	2009-09-13 00:08:01 +00:00
povchem	- update to 1.4.1	2010-03-28 06:47:48 +00:00
primer3	- Update to 1.1.4	2009-12-18 02:55:57 +00:00
protomol	- update to 1.4.1	2010-03-28 06:47:48 +00:00
psi88	Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now	2009-09-13 00:08:01 +00:00
py-biopython	- Update to 1.54	2010-07-02 02:57:19 +00:00
pycogent	- Update to 1.5.0	2010-11-10 08:52:26 +00:00
pyfasta	- Update to 0.4.1	2010-12-02 13:42:09 +00:00
pymol	Update to 1.3r1.3913.	2010-09-16 21:48:04 +00:00
python-nexus	- Update to 0.7	2010-02-24 01:30:46 +00:00
rasmol	Convert most of remaining ports that depend on xorg-libraries to	2009-06-09 15:33:28 +00:00
recombine	For ports maintained by ports@FreeBSD.org, remove names and/or	2009-12-21 02:19:12 +00:00
ruby-bio	- Update to 1.4.0	2010-06-08 00:18:54 +00:00
seaview	- update to 1.4.1	2010-03-28 06:47:48 +00:00
seqio	For ports maintained by ports@FreeBSD.org, remove names and/or	2009-12-21 02:19:12 +00:00
sim4
ssaha
t_coffee	- Respect PORTDOCS/PORTEXAMPLES	2008-09-09 13:43:15 +00:00
tinker	- Unbreak by removing some old and adding some new master sites	2010-10-30 23:51:30 +00:00
treepuzzle	Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script.	2008-08-21 06:18:49 +00:00
treeviewx	- update to 1.4.1	2010-03-28 06:47:48 +00:00
tRNAscan-SE
velvet	Velvet is a de novo genomic assembler specially designed for short read	2009-11-07 01:23:59 +00:00
wise	Fix plist.	2010-11-16 23:55:41 +00:00
xdrawchem	- update to 1.4.1	2010-03-28 06:47:48 +00:00
xmolwt
Makefile	p5-Bio-Das-Lite is an implementation of a client for the DAS protocol (XML	2010-03-01 09:16:25 +00:00