1
0
mirror of https://git.FreeBSD.org/ports.git synced 2024-11-22 00:35:15 +00:00
freebsd-ports/biology
John Marino a7ff4d0e9c biology/embassy: specify post-extraction with ${TAR}
It's possible that EXTRACT_CMD won't be predefined in the near future
in order to support distfiles in multiple formats.  We know the post-
extraction tool needs to be tar, so let's specify it directly.

This port needs staging. It doesn't like like a quick job so I'm leaving
that to the listed maintainer.

Approved by:	infrastructure improvements blanket
Approved by:	portmgr (implicit) (to skip stage check)
2014-05-29 10:47:58 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava
blast Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
blat
boinc-simap
chemeq
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
crux
embassy biology/embassy: specify post-extraction with ${TAR} 2014-05-29 10:47:58 +00:00
emboss Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
iolib
jalview
lagan
lamarc
libsbml - Update to 5.10.0 2014-05-13 07:04:17 +00:00
linux-foldingathome
mafft - Update to 7.149 2014-05-20 19:35:30 +00:00
mapm3
migrate
molden Catch a couple of missing convertsion to :tu/:tl 2014-05-05 11:15:53 +00:00
mopac
mrbayes
mummer
muscle Convert to USES=dos2unix 2014-05-26 06:55:07 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB - update to 1.31 2014-05-16 13:33:02 +00:00
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phd2fasta Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phrap Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phred Replace maintainer's email address with one that seems to work 2014-05-10 18:07:52 +00:00
phylip
phyml
platon
plink
plinkseq
povchem
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol
psi88
py-biopython - Stage 2014-04-27 01:59:47 +00:00
pycogent - Stage support [1] 2014-05-02 14:00:13 +00:00
pyfasta
pymol
python-nexus
recombine
ruby-bio
seaview - Update to 4.5.1 2014-05-21 05:40:53 +00:00
seqan
seqio
seqtools biology/seqtools: 4.25 -> 4.26, fix broken distinfo by upgrading 2014-05-02 19:00:04 +00:00
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE Support stage 2014-05-05 10:26:15 +00:00
ugene
velvet
wise
xmolwt
Makefile