..
ariadne
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
artemis
avida
babel
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
biococoa
biojava
- add stage support
2014-06-01 10:37:22 +00:00
blast
Mark as broken: no distinfo provided
2014-06-22 22:06:01 +00:00
blat
Put HOME in MAKE_ARGS to handle pverride of HOME in MAKE_ENV from bsd.port.mk
2014-06-25 08:55:55 +00:00
boinc-simap
chemeq
clustalw
Multiple ports: reset maintainers
2014-05-26 02:33:38 +00:00
consed
update ports:
2014-08-23 18:04:58 +00:00
crux
Convert a bunch of USE_BZIP2 to USES=tar:bzip2
2014-07-29 18:41:15 +00:00
embassy
Reset maintainership for ports not staged with no pending PR
2014-07-23 16:44:27 +00:00
emboss
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
fasta
fasta3
fastdnaml
fluctuate
garlic
biology/garlic: Stage properly to unbreak
2014-07-17 10:13:06 +00:00
gff2ps
gmap
gperiodic
grappa
hmmer
Add DOCS to OPTIONS_DEFINE to ports that check for PORT_OPTIONS:MDOCS.
2014-07-15 14:54:54 +00:00
iolib
- I forgot to svn add a new patch
2014-05-31 18:03:08 +00:00
jalview
lagan
lamarc
libsbml
- Update to 5.10.2
2014-08-10 06:21:53 +00:00
linux-foldingathome
Stagify.
2014-07-06 16:05:34 +00:00
mafft
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
mapm3
migrate
molden
mopac
- Switch to USES=libtool, drop .la files
2014-08-06 16:05:49 +00:00
mrbayes
Fix build on -current by un-clobbering LDFLAGS. Also, don't
2014-08-15 16:37:37 +00:00
mummer
biology/mummer: Use OPSYS with OSVERSION
2014-07-19 22:00:16 +00:00
muscle
Update to 3.8.31.
2014-06-17 21:36:06 +00:00
ncbi-toolkit
njplot
- add stage support
2014-06-01 11:26:39 +00:00
ortep3
p5-AcePerl
Fix build. Hopefully it doesn't break the app.
2014-08-22 00:33:16 +00:00
p5-Bio-ASN1-EntrezGene
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
Really fix.
2014-07-25 23:08:58 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
Remove all the bootstrap files (.bs) from the plists.
2014-06-10 12:14:12 +00:00
p5-bioperl
biology/p5-bioperl: fix pkg-descr sidenote link
2014-08-04 04:32:38 +00:00
p5-bioperl-run
biology/p5-bioperl-run: 1.6.1 -> 1.6.901, unbreak, stagify
2014-08-04 08:54:10 +00:00
paml
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
phd2fasta
Reset maintainership for ports not staged with no pending PR
2014-07-23 16:44:27 +00:00
phrap
update ports:
2014-08-23 18:04:58 +00:00
phred
update ports:
2014-08-23 18:04:58 +00:00
phylip
phyml
platon
Add a DOCS option.
2014-08-03 21:44:23 +00:00
plink
plinkseq
- Switch to USES=libtool, drop .la files
2014-07-22 22:12:15 +00:00
povchem
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
primer3
protomol
Reset maintainership for ports not staged with no pending PR
2014-07-23 16:44:27 +00:00
psi88
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
py-biopython
pycogent
pyfasta
pymol
Convert a bunch of USE_BZIP2 to USES=tar:bzip2
2014-07-29 18:41:15 +00:00
python-nexus
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
recombine
ruby-bio
seaview
- Update to 4.5.2
2014-06-04 06:28:56 +00:00
seqan
Use gcc on all platforms.
2014-07-10 22:29:52 +00:00
seqio
seqtools
USES=execinfo
2014-08-04 23:06:21 +00:00
sim4
ssaha
t_coffee
Remove indefinite articles and trailing periods from COMMENT, plus
2014-06-09 11:21:52 +00:00
tinker
treepuzzle
treeviewx
Unbreak
2014-06-04 20:08:15 +00:00
tRNAscan-SE
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
ugene
USES=execinfo
2014-08-04 23:06:21 +00:00
velvet
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
wise
xmolwt
Makefile
690da7ea38