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freebsd-ports/biology
Kurt Jaeger 681df24d3b biology/seqtools: 4.33 -> 4.34.1
Blixem
- Added functionality to shift-select a range of coordinates,
  and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
  Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
  Code reorganisation: the codebase is now in C++ rather than C,
  and a new module 'gbtools' has been created for generic
  utility functions.
2015-05-06 20:30:53 +00:00
..
ariadne
artemis
avida
babel
biococoa
biojava
blat
chemeq
clustalw
consed
crux
emboss
fasta
fasta3
fastdnaml
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
iolib
jalview
lagan
lamarc
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+ - Unbreak 2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot
ortep3
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phrap
phred
phylip
phyml
platon
plink
plinkseq
povchem
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio
samtools Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
seaview
seqan
seqio
seqtools biology/seqtools: 4.33 -> 4.34.1 2015-05-06 20:30:53 +00:00
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx
tRNAscan-SE
ugene
velvet
wise
xmolwt
Makefile