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25 lines
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25 lines
847 B
Plaintext
The LAGAN Toolkit consists of four components:
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CHAOS, a pairwise local aligner optimized for non-coding, and other
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poorly conserved regions of the genome.
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LAGAN, a highly parametrizable pairwise global alignment using local
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alignments generated by CHAOS as anchors.
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Multi-LAGAN, a progressive pairwise algorithm to produce multiple
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sequence alignments.
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Shuffle-LAGAN, a novel glocal algorithm that is able to find
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rearrangements in a global alignment.
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Fast and sensitive multiple alignment of long genomic sequences. BMC
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Bioinformatics 2003 4:66.
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LAGAN and Multi-LAGAN: efficient tools for large-scale multiple
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alignment of genomic DNA. Genome Res 2003 13(4): 721-31.
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Glocal alignment: finding rearrangements during alignment. Proceedings
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of the ISMB 2003, Bioinformatics 19: 54i-62i.
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WWW: http://lagan.stanford.edu/lagan_web/
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