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22df0dbcfa
GCTA should modify the LAPACK functios calls, this is a temporary fix. See <https://github.com/jianyangqt/gcta/issues/59>. PR: 273219 Approved by: jwb@
53 lines
1.5 KiB
Makefile
53 lines
1.5 KiB
Makefile
PORTNAME= gcta
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DISTVERSIONPREFIX= v
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DISTVERSION= 1.94.1
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PORTREVISION= 1
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Genome-wide Complex Trait Analysis
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WWW= https://cnsgenomics.com/software/gcta/index.html
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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BUILD_DEPENDS= boost-libs>0:devel/boost-libs \
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spectra>0:math/spectra
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LIB_DEPENDS= libgsl.so:math/gsl \
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libopenblas.so:math/openblas \
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libsqlite3.so:databases/sqlite3 \
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libzstd.so:archivers/zstd
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USES= cmake eigen:3 localbase:ldflags
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USE_GITHUB= yes
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GH_ACCOUNT= jianyangqt
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GH_TUPLE= zhilizheng:plink-ng:3744540:plink/submods/plink-ng
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CONFIGURE_ENV+= EIGEN3_INCLUDE_DIR=${LOCALBASE}/include/eigen3 \
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BOOST_INCLUDE_DIR=${LOCALBASE}/include/boost \
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OPENBLAS=${LOCALBASE} \
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SPECTRA_INCLUDE_DIR=${LOCALBASE}/include/Spectra
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LDFLAGS+= -fopenmp
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PLIST_FILES= bin/gcta64 bin/gcta
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.include <bsd.port.pre.mk>
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# Temporary hack for clang build errors:
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# /usr/ports/biology/gcta/work/gcta-1.94.1/submods/plink-ng/2.0/plink2_base.h:1008:23: error: argument to '__builtin_neon_vshrq_n_v' must be a constant integer
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# return R_CAST(VecW, _mm_srli_epi64(R_CAST(__m128i, vv), ct));
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# /usr/lib/clang/14.0.5/include/arm_neon.h:25260:24: note: expanded from macro 'vshrq_n_u64'
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# __ret = (uint64x2_t) __builtin_neon_vshrq_n_v((int8x16_t)__s0, __p1, 51);
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.if ${ARCH} == aarch64
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USE_GCC= yes
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.endif
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do-install:
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@${MKDIR} ${STAGEDIR}${PREFIX}/bin
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${INSTALL_PROGRAM} ${BUILD_WRKSRC}/gcta64 ${STAGEDIR}${PREFIX}/bin
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${RLN} ${STAGEDIR}${PREFIX}/bin/gcta64 ${STAGEDIR}${PREFIX}/bin/gcta
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.include <bsd.port.post.mk>
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