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freebsd-ports/biology
Christian Weisgerber 97d4b58c28 Update to 1.83.
PR:		48264
Submitted by:	David A. Bader <dbader@eece.unm.edu>
2003-02-15 18:43:14 +00:00
..
act New Port: biology/act 2003-01-16 14:22:59 +00:00
artemis
avida Add some missing files 2003-01-14 03:39:21 +00:00
babel update biology/babel to properly output mm3 files. 2003-01-03 08:52:41 +00:00
biojava
chemeq
clustalw Update to 1.83. 2003-02-15 18:43:14 +00:00
coalesce
crimap
deft PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
distribfold add '-f' argument to rm so that the script always work even if a 2003-01-23 19:27:43 +00:00
dna-qc PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
emboss - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.) 2002-09-27 08:58:19 +00:00
fasta
fasta3 Prefer <limits.h> over <values.h> as the latter has been removed from 2002-08-23 03:36:33 +00:00
fastdnaml
flip PERL -> REINPLACE 2002-11-04 05:46:38 +00:00
fluctuate
genpak o Rollback PORTCOMMENT modifications while this feature's implementation 2002-11-10 16:48:51 +00:00
gff2ps PERL -> REINPLACE 2002-11-04 01:56:21 +00:00
gperiodic Deploy USE_GNOMENG infrastructure 2002-08-30 12:59:40 +00:00
grappa
hmmer - Add patch that will, for -CURRENT only, change: -pthread -> -lc_r 2002-07-11 10:52:14 +00:00
kinemage
L-Breeder Mark BROKEN due to "Unknown problem" 2002-11-25 02:11:13 +00:00
lamarc
libgenome Update to version 0.5.1. 2003-02-11 18:13:27 +00:00
migrate
molden Update to 3.8 2003-01-08 12:05:57 +00:00
mopac
nab PERL -> REINPLACE 2002-11-04 01:56:21 +00:00
ncbi-toolkit add forgotten "USE_REINPLACE=yes" 2002-09-21 14:56:18 +00:00
nclever
ortep3
p5-AcePerl Add dependency on security/p5-Digest-MD5 2003-02-13 02:52:13 +00:00
p5-bioperl
p5-bioperl-devel
paml * Update to 3.13. 2003-02-14 23:21:23 +00:00
phylip Update to version 3.6.a3. 2002-08-13 16:07:45 +00:00
pkg
platon
povchem PERL -> REINPLACE 2002-11-04 02:35:01 +00:00
primer3 Updated to fix problems as stated in PR ports/42915 2002-11-07 13:45:17 +00:00
psi88
py-biopython Use $PYNUMERIC in the dependencies. 2002-07-15 11:37:35 +00:00
pymol 1. add a missing dependency on png and unbreak. 2002-11-19 23:01:49 +00:00
rasmol o Rollback PORTCOMMENT modifications while this feature's implementation 2002-11-10 16:48:51 +00:00
recombine
ruby-bio Update to 0.4.0. 2003-01-29 10:45:59 +00:00
seaview unbroke by upgrade to 20021018 2002-11-20 14:03:25 +00:00
seqio
sim4
spdbv upgrade to 3.7 2003-01-02 03:57:58 +00:00
t_coffee
tinker
treepuzzle add treepuzzle 5.1 2002-11-20 08:54:10 +00:00
treeviewx Chase new name of wxgtk shared library. 2002-09-09 14:21:08 +00:00
tRNAscan-SE Port needs perl to build. 2002-11-04 01:47:57 +00:00
wise Add missing file 2003-01-14 05:30:42 +00:00
xdrawchem
xmolwt Deploy USE_GNOMENG infrastructure 2002-08-30 12:59:40 +00:00
Makefile Remove gaussian98 2003-02-05 09:01:06 +00:00