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freebsd-ports/biology
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Mark Linimon 2e14f19ca3 Does not build on powerpc-9: error in pthreads. 
Hat:		portmgr
Feature safe:	yes
2011-11-10 14:30:51 +00:00
..
adun
Update math/gsl to 1.15, and adjust PORTREVISION
2011-05-09 16:42:27 +00:00
ariadne
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artemis
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
avida
Change maintainer address to my FreeBSD address
2011-09-15 12:33:27 +00:00
babel
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belvu
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biococoa
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biojava
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blast
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blat
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boinc-simap
- Fix fetch and update WWW
2011-11-04 20:39:12 +00:00
chemeq
Remove WWW entries from unmaintained ports that return 404 or where the domain
2011-08-02 20:58:23 +00:00
clustalw
Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since
2011-08-11 19:20:17 +00:00
consed
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crux
Does not build on powerpc-9: error in pthreads.
2011-11-10 14:30:51 +00:00
dna-qc
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dotter
- Updated WWW: to a working link
2011-04-22 18:59:11 +00:00
embassy
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
emboss
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
fasta
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fasta3
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
fastdnaml
- Fix MASTER_SITES and WWW: line
2011-08-26 00:24:48 +00:00
finchtv
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fluctuate
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garlic
Update to 1.6. Web site has been moved.
2011-05-11 05:55:27 +00:00
genpak
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gff2ps
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gmap
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gperiodic
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grappa
Update to GNU make 3.82 after numerous -exp runs.
2011-04-11 19:54:35 +00:00
hmmer
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iolib
- Remove WITH_FBSD10_FIX, is no longer needed
2011-11-09 15:26:04 +00:00
jalview
Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon,
2011-07-21 05:03:02 +00:00
lagan
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lamarc
Change maintainer address to my FreeBSD address
2011-09-15 12:33:27 +00:00
libgenome
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libsbml
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linux-foldingathome
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mafft
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mapm3
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migrate
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molden
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
mopac
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
mrbayes
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mummer
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muscle
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ncbi-toolkit
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
njplot
Bump PORTREVISION after open-mofit update
2011-05-02 12:44:53 +00:00
ortep3
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p5-AcePerl
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-ASN1-EntrezGene
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-Das
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-Bio-Das-Lite
- Fix missing DEPENDS to silence build warnings
2011-09-24 20:45:23 +00:00
p5-Bio-GFF3
- Update to 0.7
2011-10-10 02:33:51 +00:00
p5-Bio-Glite
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p5-Bio-Graphics
- Fix LICENSE (Artistic 1 instead of Artistic 2)
2011-10-07 11:22:46 +00:00
p5-Bio-MAGETAB
- Add build depends to silence build warnings
2011-09-25 00:07:08 +00:00
p5-Bio-NEXUS
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p5-Bio-Phylo
- Update to 0.45
2011-10-29 06:20:45 +00:00
p5-Bio-SCF
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p5-bioperl
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
p5-bioperl-run
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paml
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phd2fasta
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phrap
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phred
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phylip
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phyml
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platon
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
povchem
Switch dependency on povray to povray-meta port.
2011-06-20 22:32:03 +00:00
primer3
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
protomol
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
psi88
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py-biopython
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
pycogent
- Update to 1.5.1
2011-08-11 11:37:18 +00:00
pyfasta
- Update to 0.44
2011-10-13 06:27:34 +00:00
pymol
update to 1.4.1
2011-05-09 04:36:54 +00:00
python-nexus
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rasmol
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recombine
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ruby-bio
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seaview
- Mark BROKEN: does not compile with new fltk
2011-11-04 22:19:36 +00:00
seqio
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sim4
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ssaha
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t_coffee
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
tinker
- ${FFLAGS} might contain commas
2011-10-10 20:17:22 +00:00
treepuzzle
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treeviewx
- remove maintainer tags from pkg-descr
2011-10-22 23:50:23 +00:00
tRNAscan-SE
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velvet
Update to 1.1.04
2011-06-09 16:33:21 +00:00
wise
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xdrawchem
- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)
2011-09-23 22:26:39 +00:00
xmolwt
The vast majority of pkg-descr files had the following format when they
2011-10-24 09:11:38 +00:00
Makefile
Bye bye abandonwares (part 2)
2011-08-01 04:29:44 +00:00