Piotr Kubaj e6afd54dcf science/simgrid: fix build on non-aarch64, non-x86 ... Add libunwind to LIB_DEPENDS only on aarch64, amd64 and i386. Port builds fine without it on powerpc64 MFH: 2020Q3 (fix build blanket)		2020-08-19 09:23:36 +00:00
..
2d-rewriter
abinit	Mark BROKEN: fails to build	2020-05-29 08:38:54 +00:00
afni	science/afni: update to 20.2.11	2020-08-13 05:44:11 +00:00
agrum	science/agrum: Update 0.18.0 -> 0.18.1	2020-07-20 19:12:02 +00:00
aircraft-datcom	science/aircraft-datcom: Unbreak build with GCC 10	2020-07-04 11:07:57 +00:00
ALPSCore
antioch
apbs
atompaw
avogadro2
avogadrolibs
bagel	Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas.	2020-06-14 09:14:03 +00:00
bddsolve
berkeleygw	science/berkeleygw: Unbreak build with GCC 10	2020-06-25 06:50:17 +00:00
bodr
brian
buddy
cdcl
cdf	science/cdf: Unbreak build with GCC 10	2020-07-04 10:40:42 +00:00
cdk
cdo	Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H	2020-05-16 10:51:44 +00:00
cgnslib	science/cgnslib: Unbreak build with GCC 10	2020-07-04 11:22:08 +00:00
cgribex	Update to 1.9.4	2020-05-16 10:51:49 +00:00
checkmol
chemical-mime-data
chemps2	Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas	2020-05-06 16:39:12 +00:00
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne	science/code_saturne: fix build on GCC architectures	2020-08-17 15:33:42 +00:00
colt
coordgenlibs	science/coordgenlibs: Update 1.4.0-6 -> 1.4.1	2020-06-29 00:46:52 +00:00
cp2k	Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518	2020-05-20 02:27:15 +00:00
cp2k-data	science/cp2k-data: Update 6.1.0 -> 7.1.0	2020-05-25 04:00:02 +00:00
crf++
dalton	Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.	2020-05-06 16:11:14 +00:00
datawarrior	Deprecate ports broken for more than 6 months	2020-07-26 07:32:00 +00:00
dcl	science/dcl: Unbreak build with GCC 10	2020-07-04 06:54:39 +00:00
devisor
dftbplus	science/dftbplus: Change to python3.	2020-05-20 00:36:40 +00:00
dkh
dlib-cpp	science/dlib-cpp and science/py-dlib: Update to 19.20	2020-06-23 14:41:29 +00:00
dlpoly-classic
drawxtl
dvc	science/dvc: Remove the 2.7 python limitation because the cuplrit dependency is now python3-compatible	2020-08-13 20:23:18 +00:00
eccodes	Update to 2.18.0	2020-07-11 18:10:04 +00:00
elk	science/elk: Update 5.2.14 -> 6.8.4	2020-06-30 15:12:48 +00:00
elmerfem	science/elmerfem: Update to 8.4.20200708 and fix dependencies	2020-07-31 09:49:03 +00:00
epte
erd
ergo	Some days it does not pay to get out of bed.	2020-05-15 04:25:56 +00:00
erkale	- Update math/armadillo to 9.900.2	2020-08-10 13:12:01 +00:00
erkale-pseudopotentials	science/erkale-pseudopotentials: Update g20190114 -> g20200426	2020-05-07 00:32:03 +00:00
fastcap
fasthenry
fastjet	science/fastjet: Enable plugins; Fix the config program	2020-05-26 17:10:15 +00:00
fisicalab
fleur	Deprecate ports broken for more than 6 months	2020-07-26 07:32:00 +00:00
fsom
fvcom
fvcom-mpi
gabedit
gamess-us	Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.	2020-05-06 16:11:14 +00:00
gchemutils
gdma
getdp
ghemical	science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option	2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage	x11-toolkits/wxgtk30: Update to 3.0.5.1	2020-05-17 05:55:12 +00:00
gpaw-setups
gramps
grib_api
gromacs	science/gromacs: Update 2020.2 -> 2020.3	2020-07-16 06:32:45 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
hepmc3	science/hepmc3: Update science/hepmc3: Update 3.2.1 -> 3.2.2	2020-06-15 04:02:53 +00:00
highfive	science/highfive: Update 2.2.1 -> 2.2.2	2020-08-03 03:29:56 +00:00
hypre	science/hypre: Update 2.18.2 -> 2.19.0	2020-05-27 08:08:16 +00:00
iboview	Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas	2020-05-06 16:39:12 +00:00
InsightToolkit	- Update devel/gdcm to 3.0.7.	2020-07-04 20:53:55 +00:00
isaac-cfd	science/isaac-cfd: Unbreak build with GCC 10	2020-07-04 08:00:41 +00:00
jdftx	science/jdftx: Update 1.5.0 -> 1.6.0	2020-06-15 20:29:51 +00:00
jmol	science/jmol: Update 14.31.1 -> 14.31.2	2020-07-16 16:45:53 +00:00
jstrack
kalzium	KDE's August 2020 Apps Update	2020-08-13 17:10:30 +00:00
kim-api
kst2	science/kst2: prepare for Qt5-5.15	2020-05-18 16:42:25 +00:00
lammps	science/lammps: Update 30Jun2020 -> 21Jul2020	2020-07-21 05:16:09 +00:00
lamprop
latte	science/latte: Update 1.2.1 -> 1.2.2	2020-05-07 01:02:37 +00:00
libaec
libccp4	science/libccp4: Unbreak build with GCC 10	2020-07-04 11:10:29 +00:00
libcint	science/libcint: Update 3.0.19 -> 3.0.20	2020-05-15 15:44:22 +00:00
libctl
libefp
libgeodecomp	Mark BROKEN	2020-07-12 20:12:08 +00:00
libghemical
libgridxc	Mark BROKEN	2020-05-16 10:02:19 +00:00
libint
libint2
libkml	Convert REINPLACE_CMD to patch files	2020-05-08 20:50:41 +00:00
liblinear	Update to 2.30	2020-06-14 14:22:35 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
lm	Deprecate ports broken for more than 6 months	2020-07-26 07:32:00 +00:00
luscus
madness	Update devel/tbb to 2020.3 and bump dependent ports' revisions	2020-07-17 10:12:25 +00:00
maeparser
massxpert	Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).	2020-05-28 08:43:29 +00:00
mbdyn	Mark as BROKEN on powerpc64:	2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn	Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.	2020-05-06 16:11:14 +00:00
namd
nest
netcdf
netcdf-cxx
netcdf-fortran	science/netcdf-fortran: Unbreak build with GCC 10	2020-07-26 17:58:54 +00:00
nifticlib
nwchem	science/nwchem: Update to 7.0.0-release	2020-05-07 07:58:36 +00:00
nwchem-data	science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0	2020-05-07 02:54:17 +00:00
octopus	Mark BROKEN	2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core	Move devel/swig30 to devel/swig and update to 4.0.1	2020-06-17 18:17:45 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR	Update to 1.38	2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	Update devel/tbb to 2020.3 and bump dependent ports' revisions	2020-07-17 10:12:25 +00:00
paje
paraview	Chanse update of devel/libffi	2020-07-04 18:11:42 +00:00
pcmsolver
PETSc
plumed	science/plumed: Update 2.6.0 -> 2.6.1	2020-07-16 19:51:30 +00:00
pnetcdf
pulseview	science/pulseview: prepare for Qt5-5.15	2020-05-30 10:09:51 +00:00
py-abipy	math/py-seaborn: Update to 0.10.1	2020-05-31 21:03:37 +00:00
py-asdf	Update to 2.7.0	2020-07-24 19:01:22 +00:00
py-ase	science/py-ase: Update 3.19.2 -> 3.20.0	2020-08-10 23:52:38 +00:00
py-avogadrolibs
py-cdo
py-chainer	Bump PORTREVISION for devel/protobuf shlib change	2020-06-03 18:32:05 +00:00
py-chainer-chemistry	science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1	2020-08-17 20:05:58 +00:00
py-chempy	science/py-chempy: Update 0.7.11 -> 0.7.12	2020-07-06 17:14:00 +00:00
py-coards
py-DendroPy
py-dlib	science/dlib-cpp and science/py-dlib: Update to 19.20	2020-06-23 14:41:29 +00:00
py-eccodes-python
py-geolinks
py-geomet
py-geometer	Update to 0.2.3	2020-07-09 18:09:16 +00:00
py-gpaw	Mark BROKEN	2020-05-17 18:33:45 +00:00
py-GPy
py-GPyOpt
py-gsd	science/py-gsd: Update 1.10.0 -> 2.1.2	2020-07-22 00:31:55 +00:00
py-h5json
py-h5py
py-kim-query	New port: science/py-kim-query: Helper routines for querying the OpenKIM repository	2020-05-03 19:38:33 +00:00
py-kinematics
py-kliff	Unbreak bulk -a	2020-07-14 07:59:28 +00:00
py-liac-arff	Add py-liac-arff 2.4.0	2020-05-16 10:49:37 +00:00
py-lifelines
py-MDAnalysis	Unbreak bulk -a	2020-06-13 15:05:44 +00:00
py-MDAnalysisTests	Unbreak bulk -a	2020-06-13 15:05:44 +00:00
py-mdp	science/py-mdp: remove optional expired dependency on devel/py-pp	2020-08-15 11:19:52 +00:00
py-mmtf-python
py-molmod	science/py-molmod: Update 1.4.7 -> 1.4.8	2020-06-26 01:57:29 +00:00
py-moltemplate	science/py-moltemplate: Update 2.18.1 -> 2.18.2	2020-07-30 17:22:42 +00:00
py-netCDF4
py-obspy	- Update to 1.2.2	2020-07-18 11:50:52 +00:00
py-oddt
py-OpenFermion
py-openpiv	science/py-openpiv: update to 0.22.0	2020-06-28 11:40:46 +00:00
py-paida
py-paramz
py-phono3py	Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas	2020-05-06 16:39:12 +00:00
py-phonopy	science/py-phonopy: Update 2.5.0 -> 2.7.1	2020-08-05 19:17:19 +00:00
py-pupynere
py-pyaixi
py-pycsw
py-pydicom
py-PyFR	science/py-PyFR: Update 1.9.0 -> 1.10.0	2020-05-29 05:48:10 +00:00
py-pygeodesy
py-pygeometa
py-pygmo2	Add compiler:c++11-lang to USES to fix build on GCC-based systems:	2020-06-11 11:46:10 +00:00
py-pymatgen	- Update WWW	2020-05-26 09:32:48 +00:00
py-pymol	pymol fails to build with python 2.7	2020-05-29 08:42:46 +00:00
py-pyosf
py-pysal
py-pyteomics	Add DF, GRAPHICS, TDA, UNIMOD and XML options	2020-05-21 20:44:52 +00:00
py-qcelemental	Move devel/py-Pint to devel/py-pint	2020-07-11 18:08:50 +00:00
py-qcengine	Move sysutils/py-cpuinfo -> sysutils/py-py-cpuinfo to match the PyPI name	2020-05-18 18:56:59 +00:00
py-qspin
py-quantities
py-rmf	Move devel/swig30 to devel/swig and update to 4.0.1	2020-06-17 18:17:45 +00:00
py-rmsd
py-ruffus
py-scikit-fuzzy	science/py-scikit-fuzzy: Change to default python3	2020-05-21 00:20:33 +00:00
py-scikit-learn	- Update WWW	2020-06-17 09:35:01 +00:00
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy	science/py-scipy: Unbreak build with GCC 10	2020-07-05 11:02:17 +00:00
py-scoria
py-SimpleSpectral
py-spglib	science/py-spglib: Update 1.15.1 -> 1.16.0	2020-08-03 07:26:39 +00:00
py-tensorflow	Bump devel/jsoncpp consumers after r540853.	2020-06-30 17:46:18 +00:00
py-veusz
pybrain	Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4).	2020-05-27 15:31:55 +00:00
pynn
qbox	science/qbox: Update 1.71.3 -> 1.71.4	2020-07-16 04:11:50 +00:00
qcl
qiskit-aer	devel/libfmt: Update to 7.0.2	2020-07-31 17:07:18 +00:00
qmcpack	Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.	2020-05-06 16:11:14 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-bayesm	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-cmprsk	- Update to 2.2-10	2020-06-14 12:16:54 +00:00
R-cran-DCluster	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-e1071	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-eco	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-Epi	- Update to 2.41	2020-08-10 08:08:06 +00:00
R-cran-epicalc	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-etm	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-FAdist	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-fastICA	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-kernlab	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-snow	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-som	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
R-cran-udunits2	math/R: Update to version 4.0.0	2020-05-05 16:07:53 +00:00
rdkit
rmf
rubygem-ai4r
rubygem-cdo	Update to 1.5.1	2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis	science/scidavis:	2020-05-27 20:10:56 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody	Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas	2020-05-06 16:39:12 +00:00
simgrid	science/simgrid: fix build on non-aarch64, non-x86	2020-08-19 09:23:36 +00:00
simint
simlib
simsmith	Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).	2020-05-28 08:43:29 +00:00
smoldyn
sparta	science/sparta: Update 24Jan2020 -> 6Jul2020	2020-07-13 23:41:01 +00:00
spglib	science/spglib: Update 1.15.1 -> 1.16.0	2020-08-03 07:26:08 +00:00
step	KDE's August 2020 Apps Update	2020-08-13 17:10:30 +00:00
svmlight
szip
teem
tfel
tinker	science/tinker: Update 8.7.2 -> 8.8.1	2020-08-17 20:37:46 +00:00
udunits
v_sim	- Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching)	2020-08-04 16:00:43 +00:00
vipster	devel/libfmt: Update to 7.0.2	2020-07-31 17:07:18 +00:00
vmd
voro++
votca	science/votca: Update 1.6 -> 1.6.1	2020-06-24 02:07:28 +00:00
wannier90
wwplot
wxmacmolplt	x11-toolkits/wxgtk30: Update to 3.0.5.1	2020-05-17 05:55:12 +00:00
xcrysden	science/xcrysden: Update 1.5.60 -> 1.6.2	2020-05-16 20:16:48 +00:00
xdrawchem
xfce4-equake-plugin
xtb	science/xtb: Unbreak build with GCC 10	2020-07-04 12:19:38 +00:00
yoda	science/yoda: Update 1.8.2 -> 1.8.3	2020-07-09 00:50:09 +00:00
Makefile	Remove deprecated ports:	2020-08-15 10:50:58 +00:00