Po-Chuan Hsieh 70b81836d9 */Makefile: Sort SUBDIRs		2021-10-25 23:57:04 +08:00
..
2d-rewriter
abinit
afni	science/afni: fix build on non-x86	2021-10-22 11:42:20 +00:00
agrum	science/agrum: Update 0.22.0 -> 0.22.1	2021-09-13 15:28:57 -07:00
aircraft-datcom
ALPSCore
antioch
apbs
ascent	science/ascent: New port: Visualization and analysis runtime for multi-physics HPC simulations	2021-09-16 09:46:15 -07:00
atompaw
avogadro2
avogadrolibs	science/[,py-]spglib: Update 1.16.1 -> 1.16.2	2021-08-15 18:32:15 -07:00
axom	science/axom: Add dependencies	2021-09-18 12:37:10 -07:00
bagel
bddsolve
berkeleygw
bodr
buddy
cantera	science/cantera: Fix handling of Python versions	2021-09-19 20:08:25 -07:00
cdcl
cdf
cdk
cdo
cgnslib
cgribex
checkmol	games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION	2021-07-31 21:03:46 -05:00
chemical-mime-data	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
chemps2
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne	science/code_saturne: upgrade to 7.0.2	2021-10-18 22:17:32 +02:00
colt
conduit	science/conduit: Add dependencies	2021-09-16 12:48:34 -07:00
coordgenlibs	science/coordgenlibs: Update 2.0.3 -> 3.0.0	2021-09-09 13:00:09 -07:00
cp2k
cp2k-data
crf++
csvtk
dakota	science/dakota: fix build on non-x86	2021-10-22 11:42:25 +00:00
dalton
dcl
devisor
dftbplus
dkh
dlib-cpp
drawxtl
dvc
dynare	science/dynare: fix build on non-amd64 64-bit architectures	2021-10-08 01:25:19 +00:00
eccodes	science/eccodes: Update to 2.23.0	2021-09-22 06:23:22 +08:00
elk
elmerfem
epte	*: Return culot@'s ports to the pool (and perl@) after safekeeping his bit.	2021-09-06 23:13:27 +02:00
erd
ergo
erkale	math/armadillo: Update to 10.6.2	2021-09-21 10:25:15 +01:00
erkale-pseudopotentials
fastcap
fasthenry
fastjet
fisicalab
frontistr
fsom
fvcom
fvcom-mpi	*: Clean up some things	2021-10-12 17:01:38 +02:00
gabedit	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
gamess-us
gchemutils	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
gdma
getdp	science/getdp: Update to 3.4.0.	2021-09-24 12:35:11 -05:00
ghemical
ghmm
gnudatalanguage	science/gnudatalanguage: upgrade to v1.0.1	2021-10-20 20:19:14 +02:00
gpaw-setups
gramps	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
grib_api
gromacs	science/gromacs: Update 2021.2 -> 2021.3	2021-08-19 11:04:44 -07:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5	science/hdf5: Add CPE information	2021-10-14 12:26:24 +02:00
hdf5-18	science/hdf5-18: Add CPE information	2021-10-14 12:26:39 +02:00
healpix
helfem	math/armadillo: Update to 10.6.2	2021-09-21 10:25:15 +01:00
hepmc3	science/hepmc3: Update 3.2.3 -> 3.2.4	2021-07-09 10:01:32 -07:00
highfive	science/highfive: Update 2.3 -> 2.3.1	2021-08-05 13:10:25 -07:00
hypre	science/hypre: Update 2.22.1 -> 2.23.0	2021-10-07 11:43:15 -07:00
iboview
InsightToolkit
isaac-cfd
jdftx
jmol	science/jmol: Update 14.31.53 -> 14.31.57	2021-10-06 09:11:50 -07:00
jstrack
kalzium	KDE: Update KDE Gear to 21.08.2	2021-10-07 22:48:21 +02:00
kim-api	many: Depend on vim instead of vim-console	2021-09-02 12:09:29 -06:00
kst2
lammps	science/lammps: Update patch_2Jul2021 -> stable_29Sep2021	2021-09-30 10:30:10 -07:00
lamprop
latte
libaec	science/libaec: Update to 1.0.6	2021-09-28 03:48:08 +08:00
libccp4
libcint	science/libcint: Update 4.4.4 -> 4.4.6	2021-10-16 15:21:14 -07:00
libctl
libecpint
libefp
libgeodecomp
libghemical	science/libghemical: Remove LD_PRELOAD vecause it configured now without it	2021-09-26 10:43:55 -07:00
libgridxc
libint
libint2
libkml
liblinear
libmsym
liboglappth	*: fix tab vs. space issues, and comments according to the guide.	2021-10-16 11:51:39 +02:00
libquantum
libssm
libsvm	*: Clean up some things	2021-10-12 17:01:38 +02:00
libsvm-python
libvdwxc
libxc
liggghts
luscus
madness
maeparser
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps	games/hedgewars: lang/nbc: science/checkmol: science/mol2ps: bump PORTREVISION	2021-07-31 21:03:46 -05:00
molgif
molscript
molsketch
mpb
mpqc
msms	Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)	2021-10-25 12:58:29 +00:00
multiwfn
namd	Style: improve ONLY_FOR_ARCHS_REASON (grammar, markup, etc.)	2021-10-25 12:58:29 +00:00
nest	science/nest: Update 2.20.1 -> 3.1	2021-10-20 23:23:16 -07:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem	science/nwchem: Add the PYTHON option enabling python syntax in .nw files	2021-10-19 17:24:53 -07:00
nwchem-data
octopus	science/[,py-]spglib: Update 1.16.1 -> 1.16.2	2021-08-15 18:32:15 -07:00
openbabel	science/coordgenlibs: Update 2.0.3 -> 3.0.0	2021-09-09 13:00:09 -07:00
openems	science/openems: fix build on powerpc64*	2021-10-01 14:39:19 +00:00
openkim
openkim-models	many: Depend on vim instead of vim-console	2021-09-02 12:09:29 -06:00
openmc	science/openmc: Unbreak LIBMESH option by switching to mpich	2021-10-12 13:52:17 -07:00
openmx	science/openmx: Cleanup - remove unnecessary lines	2021-09-05 10:00:44 -07:00
opensim-core
opensph	devel/onetbb: Update to 2021.4.0	2021-10-10 17:11:27 +02:00
opsin
orthanc	cience/orthanci: Update to 1.9.7	2021-10-17 15:18:34 +08:00
orthanc-dicomweb	science/orthanc-dicomweb: Update to 1.7	2021-10-15 13:36:17 +01:00
orthanc-mysql	science/orthanc-mysql: Update to 4.3	2021-10-15 10:48:25 +01:00
orthanc-postgresql	science/orthanc-postgresql: Revive port	2021-08-07 17:40:42 -04:00
orthanc-webviewer	science/orthanc-webviewer: Update COMMENT	2021-08-07 19:32:55 -04:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol	science/p5-Chemistry-Mol: Sort PLIST	2021-07-15 00:10:34 +08:00
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit	*: Return culot@'s ports to the pool (and perl@) after safekeeping his bit.	2021-09-06 23:13:27 +02:00
packmol
pagmo2	devel/onetbb: Update to 2021.4.0	2021-10-10 17:11:27 +02:00
paje
pcmsolver
PETSc
phonopy	science/phonopy: New port: Package for phonon calculations at harmonic and quasi-harmonic levels	2021-08-05 09:51:48 -07:00
plumed	many: Depend on vim instead of vim-console	2021-09-02 12:09:29 -06:00
pnetcdf
pulseview	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
py-abipy
py-access
py-asdf
py-ase	science/py-ase: Update 3.21.1 -> 3.22.0	2021-06-28 01:08:47 -07:00
py-avogadrolibs
py-cdo	science/py-cdo: Update to 1.5.5	2021-07-25 04:21:58 +08:00
py-chainer	devel/protobuf: Update to 3.17.3	2021-07-22 02:11:52 +08:00
py-chainer-chemistry
py-chempy	science/py-chempy: Update 0.8.1 -> 0.8.2	2021-09-21 10:47:02 -07:00
py-cirq-aqt	science/py-cirq-*: Update to 0.12.0	2021-08-12 01:57:37 -07:00
py-cirq-core	science/py-cirq-*: Update to 0.12.0	2021-08-12 01:57:37 -07:00
py-cirq-google	science/py-cirq-google: Update 0.12.0 -> 0.13.0	2021-10-17 08:49:41 -07:00
py-cirq-ionq	science/py-cirq-*: Update to 0.12.0	2021-08-12 01:57:37 -07:00
py-cirq-pasqal	science/py-cirq-pasqal: Update 0.12.0 -> 0.13.0	2021-10-22 01:57:02 -07:00
py-coards
py-DendroPy
py-dipy
py-dlib
py-eccodes
py-esda	science/py-esda: Add SHAPE option	2021-09-21 11:44:54 +08:00
py-geolinks
py-geomet
py-geometer
py-geometric
py-gpaw	science/py-gpaw: Update 21.1.0 -> 21.6.0	2021-08-08 18:57:37 -07:00
py-GPy
py-GPyOpt
py-gsd	science/py-gsd: Update 2.4.2 -> 2.5.0	2021-10-14 13:08:01 -07:00
py-h5json
py-h5py	science/py-h5py: Update version requirement of BUILD_DEPENDS	2021-09-27 23:56:01 +08:00
py-hiphive	science/py-hiphive: New port: High-order force constants for the masses	2021-08-05 09:51:46 -07:00
py-inequality
py-jupyter_jsmol
py-kim-query
py-kinematics
py-kliff	science/py-kliff: Update 0.2.2 -> 0.3.0	2021-08-04 15:43:00 -07:00
py-liac-arff
py-libpysal	science/py-libpysal: Update to 4.5.1	2021-07-06 22:57:09 +08:00
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mmtf-python
py-molmod
py-moltemplate	science/py-moltemplate: Update 2.19.11 -> 2.19.12	2021-08-05 15:16:23 -07:00
py-netCDF4	science/py-netCDF4: Update version 1.3.1=>1.5.7	2021-10-10 10:32:52 -05:00
py-netcdf-flattener
py-nibabel
py-nilearn	science/py-nilearn: Update 0.8.0 -> 0.8.1	2021-09-18 10:48:28 -07:00
py-obspy
py-oddt
py-OpenFermion	science/py-OpenFermion: Update 1.1.0 -> 1.2.0	2021-10-22 01:57:02 -07:00
py-OpenMC	science/py-OpenMC: New port: Monte Carlo neutron and photon transport simulation code (Python)	2021-10-11 08:51:36 -07:00
py-openpiv
py-paida
py-paramz
py-phono3py
py-phonopy	science/py-phonopy: Update 2.10.0 -> 2.11.0	2021-08-05 09:51:47 -07:00
py-PubChemPy	science/py-PubChemPy: New port: Simple Python wrapper around the PubChem PUG REST API	2021-07-27 06:16:51 -07:00
py-pupynere
py-pyaixi
py-pyberny	science/py-pyberny: New port: Optimizer of molecular geometries with respect to the total energy	2021-10-16 16:56:19 -07:00
py-pycsw	science/py-pycsw: Add CPE information	2021-10-14 23:30:52 +02:00
py-pydicom	science/py-pydicom: Update to 2.2.2	2021-10-12 14:58:13 +08:00
py-PyFR	science/py-PyFR: Update 1.12.1 -> 1.12.2	2021-07-27 12:19:04 -07:00
py-pygeodesy	science/py-pygeodesy: Update to 21.9.16	2021-09-22 06:23:38 +08:00
py-pygeometa	science/py-pygeometa: Update to 0.8.0	2021-09-21 11:44:55 +08:00
py-pygmo2	science/py-pygmo2: Update 2.16.1 -> 2.18.0	2021-08-05 09:51:47 -07:00
py-pyked	science/py-pyked: New port: Package for manipulating Chemical Kinetics Experimental Data files	2021-09-11 00:13:16 -07:00
py-pymatgen	science/py-pymatgen: Update 2022.0.14 -> 2022.0.15	2021-10-22 08:58:25 -07:00
py-pymol
py-PyNE	science/py-PyNE: Add the moab dependency; Install the nuc_data.h5 file; Build in parallel	2021-10-10 11:49:56 -07:00
py-pyosf
py-pysal	science/py-pysal: Update to 2.5.0	2021-09-19 14:00:21 +08:00
py-pyscf
py-pyteomics	science/py-pyteomics: Update to 4.5	2021-09-22 06:23:38 +08:00
py-qcelemental	science/py-qcelemental: Update 0.22.0 -> 0.23.0; Add test target	2021-10-16 16:56:18 -07:00
py-qcengine	science/py-qcengine: Update 0.19.0 -> 0.20.1; Add test target	2021-10-16 16:56:19 -07:00
py-qspin
py-quantities	science/py-quantities: Update 0.12.4 -> 0.12.5	2021-08-17 12:10:45 -07:00
py-rmf	*: apply refactor.remove-consecutive-empty-lines	2021-10-19 10:36:47 +02:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize
py-scikit-sparse	science/py-scikit-sparse: Update 0.4.5 -> 0.4.6	2021-09-13 15:28:57 -07:00
py-scimath
py-scipy	science/py-scipy: Add CPE information	2021-08-31 09:23:26 +00:00
py-scoria
py-segregation	science/py-segregation: Update to 2.1.0	2021-09-21 11:44:55 +08:00
py-segyio	science/py-segyio: Fix tests	2021-08-16 00:06:30 -07:00
py-SimpleSpectral
py-skrebate
py-spaghetti	science/py-spaghetti: Update to 1.6.4	2021-09-27 23:56:01 +08:00
py-spglib	science/[,py-]spglib: Update 1.16.1 -> 1.16.2	2021-08-15 18:32:15 -07:00
py-tensorflow	science/py-tensorflow: enable on powerpc64le	2021-10-23 14:38:14 +00:00
py-tobler	science/py-tobler: Update to 0.8.2	2021-07-06 22:57:14 +08:00
py-veusz
pybrain
pynn
qbox	science/qbox: 1.73.2 -> 1.73.3	2021-08-20 22:56:24 -07:00
qcl
qiskit-aer	devel/libfmt: Update to 8.0.0	2021-07-22 02:11:51 +08:00
qmcpack
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071	science/R-cran-e1071: Update to 1.7-9	2021-09-18 13:18:14 +00:00
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA	science/R-cran-fastICA: Update to 1.2-3	2021-09-25 18:13:13 -04:00
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	science/coordgenlibs: Update 2.0.3 -> 3.0.0	2021-09-09 13:00:09 -07:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4	science/rubygem-rgeo-proj4: Update to 3.1.0	2021-10-14 03:17:26 +08:00
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
segyio	science/segyio: Update 1.9.6 -> 1.9.7	2021-08-15 13:34:50 -07:00
shelxle	science/shelxle: Update 1.0.1330 -> 1.0.1332	2021-10-20 17:46:02 -07:00
siconos	cleanup: drop support for EOL FreeBSD 11.X	2021-09-30 23:23:30 +02:00
siesta
sigrok-cli	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid	science/simgrid: Update 3.27 -> 3.28	2021-08-16 00:06:31 -07:00
simint
simlib
simsmith
smoldyn
sparta	science/sparta: Update 26Feb2021 -> 20Oct2021	2021-10-20 23:23:15 -07:00
spglib	science/[,py-]spglib: Update 1.16.1 -> 1.16.2	2021-08-15 18:32:15 -07:00
step	KDE: Update KDE Gear to 21.08.2	2021-10-07 22:48:21 +02:00
svmlight
szip
teem
tfel
tfel-edf
thermofun	science/thermofun: Update 0.3.7 -> 0.3.8	2021-06-28 15:46:19 -07:00
tinker	science/tinker: Update 8.9.5 -> 8.10.1	2021-10-11 08:51:36 -07:00
udunits
v_sim	INSTALLS_ICONS: retire the macro and rework the related dependencies	2021-10-10 21:44:42 +02:00
vipster
vmd
voro++
votca	science/votca: Update 2021.2 -> 2021.2-18560	2021-09-28 17:49:03 -07:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb
yoda	science/yoda: Update 1.9.0 -> 1.9.1	2021-09-12 10:27:25 -07:00
Makefile	*/Makefile: Sort SUBDIRs	2021-10-25 23:57:04 +08:00