| .. |
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abyss
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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ad2vcf
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biology/ad2vcf: Update to 0.1.6
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2022-06-11 09:26:57 -05:00 |
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artemis
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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avida
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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babel
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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bamtools
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bamutil
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bbmap
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bcftools
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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bedtools
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bfc
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bio-mocha
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bioawk
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biococoa
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biolibc
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biology/biolibc: Update to 0.2.3
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2022-06-11 09:26:56 -05:00 |
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biolibc-tools
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*: bump PORTREVISION of all devel/xxhash users...
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2022-08-13 20:51:14 +02:00 |
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bioparser
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biosig
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biology/biosig: Update 2.4.1 -> 2.4.2
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2022-06-19 09:53:42 -07:00 |
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biosoup
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biostar-tools
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bolt-lmm
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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bowtie
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bowtie2
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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bwa
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canu
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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cd-hit
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biology/cd-hit: check for omp.h on all architectures
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2022-04-27 13:22:07 +00:00 |
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cdbfasta
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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checkm
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biology/checkm: Update 1.1.11 -> 1.2.0
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2022-05-01 11:14:09 -07:00 |
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clustal-omega
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clustalw
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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cufflinks
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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cytoscape
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ddocent
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diamond
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biology/diamond: Update to 2.0.15
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2022-04-24 14:50:21 -03:00 |
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dsr-pdb
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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edlib
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emboss
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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erminej
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exonerate
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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fasta
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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fasta3
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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fastahack
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fastdnaml
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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fastool
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fastp
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fastq-trim
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fastqc
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fasttree
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biology/fasttree: check for omp.h on all architectures
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2022-04-27 13:22:02 +00:00 |
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fastx-toolkit
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figtree
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flash
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fluctuate
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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freebayes
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garlic
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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gatk
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biology/gatk: mark BROKEN
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2022-08-11 21:33:41 +03:00 |
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gcta
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biology/gcta: Use bundled version of eigen3
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2022-07-06 13:40:04 -07:00 |
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gemma
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generand
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gff2ps
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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gffread
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gmap
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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gperiodic
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cleanup: remove '$MCom' tag
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2022-07-20 21:44:12 +02:00 |
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graphlan
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groopm
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haplohseq
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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hhsuite
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biology/hhsuite: Fix build on some architectures
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2022-08-04 09:21:45 -07:00 |
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hisat2
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hmmer
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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htslib
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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hyphy
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biology/hyphy: Update 2.5.40 -> 2.5.41
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2022-08-06 15:23:11 -07:00 |
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igv
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infernal
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iolib
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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iqtree
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*/*: bump all consumers after recent boost upgrade
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2022-08-12 17:46:53 +03:00 |
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jalview
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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jellyfish
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kallisto
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science/hdf5: bump PORTREVISION of consumers
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2022-07-20 16:35:24 +02:00 |
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kmcp
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biology/kmcp: Update 0.8.3 -> 0.8.4
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2022-08-18 11:56:49 -07:00 |
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lamarc
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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libbigwig
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libgff
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libgtextutils
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libneurosim
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libnuml
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biology/{,py-}libnuml: Update 1.1.5 -> 1.1.6
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2022-04-23 18:36:56 -07:00 |
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libsbml
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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libsedml
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biology/{,py-}libsedml: Update 2.0.31 -> 2.0.32
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2022-06-08 22:53:28 -07:00 |
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linux-foldingathome
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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mafft
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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mapm3
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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migrate
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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minimap2
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mmseqs2
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biology/mmseqs2: Not require OpenMP on systems where OpenMP isn't enabled
|
2022-07-23 09:40:43 -07:00 |
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molden
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biology/molden: Update 6.7 -> 7.1
|
2022-07-23 13:00:53 -07:00 |
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mothur
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biology/mothur: Update 1.47.0 -> 1.48.0
|
2022-05-19 19:10:18 -07:00 |
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mrbayes
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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mummer
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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muscle
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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ncbi-blast+
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devel/grpc: Update to 1.48.0
|
2022-07-30 13:57:09 +08:00 |
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ncbi-cxx-toolkit
|
biology/ncbi-cxx-toolkit: Broken on armv6
|
2022-08-06 16:28:43 -07:00 |
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ncbi-entrez-direct
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all: Bump PORTREVISION after Go update
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2022-08-03 16:35:13 -05:00 |
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ncbi-toolkit
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biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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ncbi-vdb
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science/hdf5: bump PORTREVISION of consumers
|
2022-07-20 16:35:24 +02:00 |
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ngs-sdk
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biology/ngs-sdk: Broken on armv6, armv7
|
2022-07-22 15:34:07 -07:00 |
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p5-AcePerl
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-ASN1-EntrezGene
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Cluster
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Coordinate
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Das
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Das-Lite
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-DB-EMBL
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-DB-NCBIHelper
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-FeatureIO
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-GFF3
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Glite
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Graphics
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-MAGETAB
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-NEXUS
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Phylo
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-SCF
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-Bio-Variation
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-BioPerl
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-BioPerl-Run
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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p5-transdecoder
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p5-TrimGalore
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paml
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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pbbam
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*/*: bump all consumers after recent boost upgrade
|
2022-08-12 17:46:53 +03:00 |
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pbseqan
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peak-classifier
|
biology/peak-classifier: Update to 0.1.4
|
2022-06-11 09:26:57 -05:00 |
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pear-merger
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phrap
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phred
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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phyml
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biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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picard-tools
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plink
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pooler
|
biology/pooler: Update to 1.85
|
2022-07-12 07:47:45 -05:00 |
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primer3
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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prodigal
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prodigy-lig
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protomol
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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psi88
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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py-bcbio-gff
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py-biom-format
|
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py-biopython
|
biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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py-bx-python
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biology: remove 'Created by' lines
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2022-07-20 16:20:57 +02:00 |
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py-crossmap
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py-cutadapt
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py-deeptools
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py-deeptoolsintervals
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py-dna-features-viewer
|
biology/py-dna-features-viewer: Update to 3.1.1
|
2022-05-08 07:48:38 -05:00 |
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py-dnaio
|
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py-ete3
|
biology/py-ete3: Add tests
|
2022-08-06 15:23:11 -07:00 |
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py-Genesis-PyAPI
|
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py-gffutils
|
biology/py-gffutils: Update 0.10.1 -> 0.11.0
|
2022-06-06 17:38:48 -07:00 |
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py-goatools
|
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py-gtfparse
|
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py-hits
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py-libnuml
|
biology/{,py-}libnuml: Update 1.1.5 -> 1.1.6
|
2022-04-23 18:36:56 -07:00 |
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py-libsedml
|
biology/{,py-}libsedml: Update 2.0.31 -> 2.0.32
|
2022-06-08 22:53:28 -07:00 |
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py-loompy
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py-macs2
|
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py-mrcfile
|
biology/py-mrcfile: Update 1.4.0 -> 1.4.2
|
2022-07-29 01:46:46 -07:00 |
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py-multiqc
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py-ont-fast5-api
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py-orange3-bioinformatics
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py-orange3-single-cell
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py-pandas-charm
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py-py2bit
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py-pybigwig
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py-pyfaidx
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py-pysam
|
biology/py-pysam: Remove BROKEN lines
|
2022-07-19 08:51:56 -07:00 |
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py-PySCeS
|
biology/py-PySCeS: Update 1.0.1 -> 1.0.2
|
2022-05-20 15:02:59 -07:00 |
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py-python-libsbml
|
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py-pywgsim
|
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py-resdk
|
biology/py-resdk: Update 14.1.0 -> 15.0.0
|
2022-06-06 17:38:49 -07:00 |
|
py-scikit-bio
|
biology/py-scikit-bio: Broken on aarch64
|
2022-06-03 15:56:03 -07:00 |
|
py-xenaPython
|
|
|
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pyfasta
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
python-nexus
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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rainbow
|
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rampler
|
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readseq
|
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recombine
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
ruby-bio
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
rubygem-bio
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
rubygem-bio-executables
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
rubygem-bio-old-biofetch-emulator
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
rubygem-bio-shell
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
sam2pairwise
|
|
|
|
samtools
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
scrm
|
|
|
|
seaview
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
seqan
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
seqan1
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
seqan3
|
*/*: bump all consumers after recent boost upgrade
|
2022-08-12 17:46:53 +03:00 |
|
seqan-apps
|
*/*: bump all consumers after recent boost upgrade
|
2022-08-12 17:46:53 +03:00 |
|
seqio
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
seqkit
|
all: Bump PORTREVISION after Go update
|
2022-08-03 16:35:13 -05:00 |
|
seqtk
|
|
|
|
sigviewer
|
|
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sim4
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
slclust
|
|
|
|
smithwaterman
|
|
|
|
snpeff
|
cleanup: remove expired versions of OpenJDK (12 through 16)
|
2022-05-24 22:09:35 +02:00 |
|
spoa
|
*/*: bump all consumers after recent boost upgrade
|
2022-08-12 17:46:53 +03:00 |
|
sra-tools
|
science/hdf5: bump PORTREVISION of consumers
|
2022-07-20 16:35:24 +02:00 |
|
stacks
|
|
|
|
star
|
biology/star: Broken on systems where OpenMP isn't enabled
|
2022-07-23 18:24:10 -07:00 |
|
stringtie
|
|
|
|
subread
|
|
|
|
tabixpp
|
|
|
|
taxonkit
|
all: Bump PORTREVISION after Go update
|
2022-08-03 16:35:13 -05:00 |
|
treekin
|
|
|
|
treepuzzle
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
trimadap
|
|
|
|
trimmomatic
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
tRNAscan-SE
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
ucsc-userapps
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
ugene
|
biology/ugene: Correct BROKEN message
|
2022-08-04 09:35:24 -07:00 |
|
unikmer
|
all: Bump PORTREVISION after Go update
|
2022-08-03 16:35:13 -05:00 |
|
vcf2hap
|
biology/vcf2hap: Update to 0.1.6
|
2022-06-11 09:26:57 -05:00 |
|
vcf-split
|
biology/vcf-split: Update to 0.1.5
|
2022-06-11 09:26:56 -05:00 |
|
vcflib
|
Fix CONFLICTS_INSTALL in benchmarks and biology
|
2022-06-29 16:53:54 +02:00 |
|
vcftools
|
|
|
|
velvet
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
|
viennarna
|
biology/viennarna: Update 2.5.0 -> 2.5.1
|
2022-07-31 01:12:49 -07:00 |
|
vsearch
|
|
|
|
vt
|
|
|
|
wise
|
biology: remove 'Created by' lines
|
2022-07-20 16:20:57 +02:00 |
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Makefile
|
biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale genome searching
|
2022-08-07 13:30:47 -07:00 |
