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and thoroughly tested framework for: controlling third-party applications; devising workflows; querying databases; conducting novel probabilistic analyses of biological sequence evolution; and generating publication quality graphics. It is distinguished by many unique built-in capabilities (such as true codon alignment) and the frequent addition of entirely new methods for the analysis of genomic data. WWW: http://pycogent.sourceforge.net/ PR: ports/135863 Submitted by: Wen Heping <wenheping at gmail.com>
29 lines
717 B
Makefile
29 lines
717 B
Makefile
# New ports collection makefile for: pycogent
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# Date created: 20 June, 2009
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# Whom: Wen Heping <wenheping@gmail.com>
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#
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# $FreeBSD$
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#
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PORTNAME= pycogent
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PORTVERSION= 1.3.1
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CATEGORIES= biology python
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MASTER_SITES= SF
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DISTNAME= PyCogent-${PORTVERSION}
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EXTRACT_SUFX= .tgz
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MAINTAINER= wenheping@gmail.com
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COMMENT= A toolkit for statistical analysis of biological sequences
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BUILD_DEPENDS= ${PYNUMPY} \
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${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \
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${LOCALBASE}/bin/sphinx-build:${PORTSDIR}/textproc/py-sphinx \
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${PYTHON_PKGNAMEPREFIX}sqlalchemy>=0.5:${PORTSDIR}/databases/py-sqlalchemy
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RUN_DEPENDS= ${BUILD_DEPENDS}
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USE_PYTHON= yes
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USE_PYDISTUTILS= yes
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PYDISTUTILS_PKGNAME= cogent
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.include <bsd.port.mk>
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