Fernando Apesteguía 822303c712 science/afni: update to 21.0.10 ... Reported by: portscout		2021-02-24 12:26:32 +00:00
..
2d-rewriter
abinit	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
afni	science/afni: update to 21.0.10	2021-02-24 12:26:32 +00:00
agrum	science/agrum: Update 0.19.0 -> 0.19.1	2021-02-18 19:19:03 +00:00
aircraft-datcom
ALPSCore
antioch
apbs
atompaw	science/atompaw: Update 4.1.0.6 -> 4.1.1.0	2021-01-29 21:59:39 +00:00
avogadro2
avogadrolibs
axom
bagel
bddsolve
berkeleygw
bodr
buddy
cdcl	Mark these ports as BROKEN: fail to fetch from mastersite.	2021-02-19 14:27:49 +00:00
cdf
cdk
cdo	science/cdo: fix build on powerpc64le, powerpc64 with CPUTYPE=power6 and newer with Clang	2021-02-16 16:42:28 +00:00
cgnslib	science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with	2020-12-26 11:48:36 +00:00
cgribex	science/cgribex: fix build on powerpc64le, powerpc64 with CPUTYPE=power6 and newer with Clang	2021-01-27 13:16:16 +00:00
checkmol	- lang/fpc revert way like linker is taken by fpc compiler	2021-01-14 21:11:15 +00:00
chemical-mime-data
chemps2	science/chemps2: Update 1.8.9 -> 1.8.10	2021-02-01 09:53:54 +00:00
chemtool
chemtool-devel	Mark BROKEN in 13/14 (via latest llvm update).	2021-02-18 03:32:16 +00:00
chrono	science/chrono: Update 5.0.1 -> 6.0.0	2021-02-12 11:13:40 +00:00
clhep
clipper
code_saturne	Remove PY_SPHINX from ports using Python 3	2021-01-14 14:34:38 +00:00
colt
conduit	science/conduit: Update 0.6.0 -> 0.7.1	2021-02-12 20:49:39 +00:00
coordgenlibs
cp2k	Update GCC_DEFAULT from 9 to 10.	2021-01-13 23:03:31 +00:00
cp2k-data
crf++
dakota	science/dakota: Add port options GUI, HDF5, enable some more optional features	2021-02-23 18:51:40 +00:00
dalton
dcl	Mark these ports as BROKEN: fail to fetch from mastersite.	2021-02-19 14:27:49 +00:00
devisor
dftbplus
dkh
dlib-cpp	science/dlib-cpp: fix build on powerpc64le	2021-01-11 14:07:58 +00:00
drawxtl
dvc
eccodes	Update to 2.20.0	2021-01-30 12:21:28 +00:00
elk	science/elk: Not broken any more.	2021-01-05 07:42:49 +00:00
elmerfem	Update GCC_DEFAULT from 9 to 10.	2021-01-13 23:03:31 +00:00
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap	Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64	2021-01-01 23:51:48 +00:00
fasthenry	Mark ports that are BROKEN due to sbrk on aarch64, also BROKEN on riscv64	2021-01-01 23:51:48 +00:00
fastjet
fisicalab	Update a few GNUstep ports:	2021-02-14 23:21:02 +00:00
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gchemutils	science/openbabel: Upgrade 2.4.1 -> 3.1.1	2021-01-13 00:31:38 +00:00
gdma
getdp	Fix r561520	2021-01-26 17:56:08 +00:00
ghemical
ghmm
gnudatalanguage	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
gpaw-setups
gramps
grib_api	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
gromacs	science/gromacs: Update 2020.5 -> 2021	2021-02-18 20:43:09 +00:00
gsmc
gtamsanalyzer	Update a few GNUstep ports:	2021-02-14 23:21:02 +00:00
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix	Bump PORTREVISION for astro/cfitsio shlib change	2021-01-26 14:00:17 +00:00
hepmc3
highfive
hypre
iboview
InsightToolkit
isaac-cfd
jdftx
jmol	science/jmol: Update 14.31.28 -> 14.31.29	2021-02-02 17:14:59 +00:00
jstrack
kalzium	Update KDE Release-Service to 20.12.2	2021-02-04 19:21:17 +00:00
kim-api
kst2	science/kst2:	2021-02-23 15:46:37 +00:00
lammps	science/lammps: Update 24Dec2020 -> 10Feb2021	2021-02-18 05:38:11 +00:00
lamprop	science/lamprop:	2021-01-06 16:06:28 +00:00
latte
libaec	Use upstream release tarball	2021-02-06 20:44:01 +00:00
libccp4
libcint
libctl
libecpint	New port: science/libecpint: Library for the evaluation of integrals over effective core potentials	2021-02-24 07:39:06 +00:00
libefp
libgeodecomp
libghemical
libgridxc	Fix r561520	2021-01-26 17:56:12 +00:00
libint
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus	science/openbabel: Upgrade 2.4.1 -> 3.1.1	2021-01-13 00:31:38 +00:00
madness	science/madness: Make TBB dependency optional, OFF by default until the upstream fixes oneTBB support	2021-01-15 18:35:59 +00:00
maeparser
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix	Do not include bsd.port.mk twice	2021-02-01 19:54:12 +00:00
medit
metaphysicl
minc2	Mark BROKEN in 13/14 (via latest llvm update).	2021-02-18 03:08:19 +00:00
mmdb2
mmtf-cpp
mol2ps	- lang/fpc revert way like linker is taken by fpc compiler	2021-01-14 21:11:15 +00:00
molgif
molscript
molsketch	science/openbabel: Upgrade 2.4.1 -> 3.1.1	2021-01-13 00:31:38 +00:00
mpb
mpqc	devel/doxygen: Update to 1.9.0	2021-01-08 07:47:02 +00:00
msms
multiwfn
namd
nest
netcdf	science/netcdf: move byteswap4 and byteswap8 fuctions higher so that they are declared when necessary	2021-02-15 16:31:32 +00:00
netcdf-cxx	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
netcdf-fortran	Update to 4.5.3	2021-01-26 14:04:11 +00:00
nifticlib
nwchem
nwchem-data
octopus	science/octopus: Update 10.1 -> 10.3	2021-01-12 07:49:47 +00:00
openbabel	science/openbabel: Update 2.4.1 -> 3.1.1	2021-01-13 04:02:26 +00:00
openkim
openkim-models	science/openkim-model: Update 2019-07-25 -> 2021-01-28	2021-01-29 18:27:12 +00:00
opensim-core
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements	Update to 1.074	2021-01-26 17:54:46 +00:00
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS	Update to 0.118	2021-01-26 17:54:51 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2
paje	Update a few GNUstep ports:	2021-02-14 23:21:02 +00:00
pcmsolver
PETSc
plumed	science/plumed: Update 2.6.2 -> 2.7.0	2021-01-03 06:32:47 +00:00
pnetcdf	Cosmetic change	2021-01-26 17:22:01 +00:00
pulseview
py-abipy	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-access	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-asdf	Update to 2.7.2	2021-01-26 17:37:23 +00:00
py-ase	science/py-ase: Update 3.21.0 -> 3.21.1	2021-01-29 16:38:20 +00:00
py-avogadrolibs	Mark BROKEN	2020-12-25 09:16:26 +00:00
py-cdo	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-chainer	Bump PORTREVISION for devel/protobuf shlib change	2021-01-26 14:01:09 +00:00
py-chainer-chemistry	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-chempy
py-coards	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-DendroPy	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-dipy	New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging	2021-01-21 03:21:18 +00:00
py-dlib	science/py-dlib: fix build on powerpc64le	2021-01-25 12:59:42 +00:00
py-eccodes	Convert to test framework	2021-02-06 20:47:09 +00:00
py-esda	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-geolinks	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-geomet	Update to 0.3.0	2021-01-30 12:25:36 +00:00
py-geometer
py-geometric
py-gpaw	science/py-gpaw: Update 20.10.0 -> 21.1.0	2021-02-15 05:08:17 +00:00
py-GPy
py-GPyOpt
py-gsd	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-h5json	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-h5py	Update to 3.1.0	2021-01-26 17:37:37 +00:00
py-inequality	Add py-inequality 1.0.0	2021-01-03 19:58:04 +00:00
py-jupyter_jsmol	Upgrade to v0.2.6.	2021-01-29 18:37:56 +00:00
py-kim-query	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-kinematics	Remove py-pytest-runner from BUILD_DEPENDS	2021-01-10 23:14:07 +00:00
py-kliff	science/py-kliff: Update 0.1.7 -> 0.2.0	2021-02-16 00:31:47 +00:00
py-liac-arff	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-libpysal	Update to 4.4.0	2021-02-03 19:49:19 +00:00
py-lifelines	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-MDAnalysis
py-MDAnalysisTests	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-mdp	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-mmtf-python	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-molmod	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-moltemplate	science/py-moltemplate: Update 2.19.5 -> 2.19.6	2021-02-19 09:50:39 +00:00
py-netCDF4	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
py-netcdf-flattener	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-nibabel	New port: science/py-nibabel: Read/write some common neuroimaging file formats	2021-01-21 02:07:06 +00:00
py-nilearn	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:37:02 +00:00
py-obspy
py-oddt	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-OpenFermion
py-openpiv	science/py-openpiv: update to 0.23.4	2021-01-27 06:26:23 +00:00
py-paida	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-paramz
py-phono3py
py-phonopy	science/py-phonopy: Update 2.9.0 -> 2.9.1	2021-01-30 10:43:11 +00:00
py-pupynere	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-pyaixi	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-pycsw
py-pydicom
py-PyFR
py-pygeodesy	Update to 21.1.21	2021-01-30 12:25:47 +00:00
py-pygeometa	Update to 0.6.0	2021-01-26 17:37:42 +00:00
py-pygmo2
py-pymatgen	science/py-pymatgen: Update 2021.2.14 -> 2021.2.16	2021-02-22 21:48:14 +00:00
py-pymol	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
py-pyosf	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-pysal	Update to 2.3.0	2021-02-01 19:35:52 +00:00
py-pyteomics	Update to 4.4.1	2021-01-26 17:37:47 +00:00
py-qcelemental
py-qcengine
py-qspin
py-quantities	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-rmf	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-rmsd
py-ruffus	Drop python 2.7 support from a few ports	2020-12-28 23:02:12 +00:00
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy	science/py-scipy: Update 1.5.4 -> 1.6.0	2021-01-23 05:37:12 +00:00
py-scoria
py-segregation	Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+	2021-01-30 13:29:58 +00:00
py-segyio	science/py-segyio: Update 1.9.5 -> 1.9.6	2021-02-22 05:47:56 +00:00
py-SimpleSpectral
py-spaghetti	Update to 1.5.6	2021-02-03 19:49:25 +00:00
py-spglib	science/py-spglib: Update 1.16.0 -> 1.16.1	2021-02-01 04:28:32 +00:00
py-tensorflow	Bump PORTREVISION for devel/re2 shlib change	2021-02-03 19:46:35 +00:00
py-tobler	Update to 0.7.0	2021-02-03 19:49:32 +00:00
py-veusz	science/py-veusz: Update 3.2.1 -> 3.3.1	2021-02-22 08:11:07 +00:00
pybrain
pynn	- Update to 0.9.6	2020-12-31 08:19:47 +00:00
qbox
qcl
qiskit-aer
qmcpack
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi	- Update to 2.43	2021-01-30 04:53:09 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	science/rdkit: Update 2020.09.3 -> 2020.09.4	2021-01-23 06:24:28 +00:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
scidavis
segyio	science/segyio: Update 1.9.5 -> 1.9.6	2021-02-22 05:47:15 +00:00
shelxle	science/shelxle: Update 1.0.1215 -> 1.0.1226	2021-02-12 20:38:28 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid	science/simgrid: Update 3.25 -> 3.26	2021-01-04 22:59:09 +00:00
simint
simlib	For ports on riscv64 that fail the same (or similar ways) to aarch64, mark	2021-01-02 01:46:08 +00:00
simsmith
smoldyn
sparta
spglib	science/spglib: Update 1.16.0 -> 1.16.1	2021-02-14 04:51:30 +00:00
step	Update KDE Release-Service to 20.12.2	2021-02-04 19:21:17 +00:00
svmlight
szip
teem
tfel
tfel-edf	- Chase gfortran10 and do not force Gcc any more;	2021-01-24 11:19:08 +00:00
thermofun	New port: science/thermofun: Code for calculating thermodynamic properties of materials	2021-02-02 00:48:20 +00:00
tinker
udunits	Update to 2.2.28	2021-01-03 20:05:21 +00:00
v_sim	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
vipster
vmd	Bump PORTREVISION for science/netcdf shlib change	2021-01-26 14:04:01 +00:00
voro++
votca
wannier90	science/wannier90: Rename the shared library libwannier90.so -> libwannier.so to match the static library name that it creates	2021-01-02 00:39:14 +00:00
wwplot
wxmacmolplt
xcrysden	science/cgnslib: rename unitconv to unitconv.sh, thus avoiding the conflict with	2020-12-26 11:48:36 +00:00
xdrawchem	science/xdrawchem: 1.10.2-1 -> 1.11.0-2	2021-01-13 00:52:20 +00:00
xtb
yoda
Makefile	New port: science/libecpint: Library for the evaluation of integrals over effective core potentials	2021-02-24 07:39:06 +00:00