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freebsd-ports/biology
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Philip M. Gollucci c58c954676 - Update to 1.4.1 
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
2010-12-27 15:11:50 +00:00
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adun
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ariadne
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artemis
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avida
Also broken on sparc64 (and, by implication, ia64).
2010-09-17 09:17:05 +00:00
babel
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belvu
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biococoa
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biojava
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blast
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blat
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boinc-simap
- Update the libmap instructions for amd64/8
2010-07-29 08:30:24 +00:00
chemeq
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clustalw
- Fix fetch
2010-12-21 00:12:22 +00:00
consed
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crimap
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crux
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distribfold
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dna-qc
BROKEN should not be quoted.
2010-06-13 08:40:06 +00:00
dotter
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embassy
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emboss
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
fasta
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fasta3
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fastdnaml
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finchtv
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fluctuate
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garlic
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genpak
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gff2ps
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gmap
- fix fetch: wget is not required for fetching
2010-12-12 08:10:05 +00:00
gperiodic
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grappa
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hmmer
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iolib
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
jalview
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kinemage
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L-Breeder
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lagan
- Unbreak build: CPP is now part of MAKE_ENV
2010-11-08 15:05:11 +00:00
lamarc
- Update to 2.1.5
2010-08-04 06:30:07 +00:00
libgenome
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
libsbml
- Update to 4.2.0
2010-10-08 02:06:53 +00:00
linux-foldingathome
Improve port description.
2010-11-29 08:17:34 +00:00
lsysexp
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mafft
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mapm3
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migrate
- Add an additional MASTER_SITES
2010-10-01 01:06:46 +00:00
molden
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mopac
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
mrbayes
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mummer
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muscle
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ncbi-toolkit
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njplot
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ortep3
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
Change dependency on old p5-Compress-Zlib, p5-IO-Compress-Base,
2010-09-21 07:56:43 +00:00
p5-Bio-Das-Lite
- Update to 2.10
2010-11-04 06:24:22 +00:00
p5-Bio-Glite
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p5-Bio-Graphics
- Update to 2.18
2010-12-23 06:37:08 +00:00
p5-Bio-MAGETAB
- Update to 1.13
2010-09-07 07:00:17 +00:00
p5-Bio-NEXUS
- Use canonical format for FreeBSD.org MAINTAINER addresses
2010-12-25 16:55:41 +00:00
p5-Bio-Phylo
- Update to 0.34
2010-12-23 06:33:33 +00:00
p5-Bio-SCF
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p5-bioperl
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p5-bioperl-run
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paml
- Update to 4.4c
2010-09-08 00:16:45 +00:00
phd2fasta
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phrap
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phred
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phylip
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phyml
Sync to new bsd.autotools.mk
2010-12-04 07:34:27 +00:00
platon
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povchem
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primer3
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protomol
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psi88
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py-biopython
- Update to 1.54
2010-07-02 02:57:19 +00:00
pycogent
- Update to 1.5.0
2010-11-10 08:52:26 +00:00
pyfasta
- Update to 0.4.1
2010-12-02 13:42:09 +00:00
pymol
Update to 1.3r1.3913.
2010-09-16 21:48:04 +00:00
python-nexus
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rasmol
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recombine
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ruby-bio
- Update to 1.4.1
2010-12-27 15:11:50 +00:00
seaview
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seqio
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sim4
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ssaha
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t_coffee
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tinker
- Unbreak by removing some old and adding some new master sites
2010-10-30 23:51:30 +00:00
treepuzzle
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treeviewx
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tRNAscan-SE
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velvet
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wise
Fix plist.
2010-11-16 23:55:41 +00:00
xdrawchem
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xmolwt
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Makefile
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