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73 lines
2.2 KiB
Makefile
73 lines
2.2 KiB
Makefile
# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
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# $FreeBSD$
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PORTNAME= lagan
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PORTVERSION= 2.0
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CATEGORIES= biology
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MASTER_SITES= http://lagan.stanford.edu/lagan_web/
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DISTNAME= ${PORTNAME}${PORTVERSION:S/.//}
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MAINTAINER= ports@FreeBSD.org
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COMMENT= Efficient tools for large-scale multiple alignments of genomic DNA
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LICENSE= GPLv2
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USES= perl5
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USE_PERL5= run
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MAKE_JOBS_UNSAFE=yes
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SUB_FILES= pkg-message
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SUB_LIST= LAGAN_DIR="${LAGAN_DIR}"
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PLIST_FILES= ${EXECUTABLES:S,^,${PORTNAME}/,} \
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${SCRIPTS:S,^,${PORTNAME}/,} \
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${EXEUTILS:S,^,${PORTNAME}/utils/,} \
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${SCRIPTUTILS:S,^,${PORTNAME}/utils/,} \
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${READMES:S,^,${PORTNAME}/Readmes/,}
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PLIST_DIRS= ${PORTNAME}/utils ${PORTNAME}/Readmes
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PLIST_DIRSTRY= ${PORTNAME}
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LAGAN_DIR= ${PREFIX}/${PORTNAME}
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EXECUTABLES= anchors chaos glocal mlagan order
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SCRIPTS= anal_gloc.pl lagan.pl rechaos.pl slagan.pl
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EXEUTILS= Glue bin2bl bin2mf cextract contigorder cstat dotplot fa2xfa \
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getbounds getcontigpos getlength getoverlap rc scorealign \
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scorecontigs seqmerge
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SCRIPTUTILS= cmerge2.pl draft.pl mextract.pl mf2bin.pl mpretty.pl \
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mproject.pl mrun.pl mrunfile.pl mrunpairs.pl mviz.pl
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READMES= README.FIRST README.chaos README.lagan README.mlagan \
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README.tools README.shuffle
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post-patch:
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@${FIND} ${WRKSRC} -name "Makefile" | ${XARGS} ${REINPLACE_CMD} -e \
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'/^CC/s|^|#| ; \
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/^CFLAGS/s|^|#| ; \
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s|$$(CC) -o|$$(CC) $$(CFLAGS) -o| ; \
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s|$$(CPP) -o|$$(CXX) $$(CXXFLAGS) -o| ; \
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s|$$(CLINKER) $$(OPTFLAGS)|$$(CXX) $$(LDFLAGS)|'
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@${FIND} ${WRKSRC}/src -name "*.c" | ${XARGS} ${REINPLACE_CMD} -e \
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's|^inline |static inline |'
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do-install:
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@${MKDIR} ${STAGEDIR}${LAGAN_DIR}
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.for exe in ${EXECUTABLES}
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${INSTALL_PROGRAM} ${WRKSRC}/${exe} ${STAGEDIR}${LAGAN_DIR}
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.endfor
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.for script in ${SCRIPTS}
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${INSTALL_SCRIPT} ${WRKSRC}/${script} ${STAGEDIR}${LAGAN_DIR}
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.endfor
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@${MKDIR} ${STAGEDIR}${LAGAN_DIR}/utils
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.for exeutil in ${EXEUTILS}
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${INSTALL_PROGRAM} ${WRKSRC}/utils/${exeutil} ${STAGEDIR}${LAGAN_DIR}/utils
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.endfor
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.for scriptutil in ${SCRIPTUTILS}
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${INSTALL_SCRIPT} ${WRKSRC}/utils/${scriptutil} ${STAGEDIR}${LAGAN_DIR}/utils
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.endfor
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@${MKDIR} ${STAGEDIR}${LAGAN_DIR}/Readmes
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.for readme in ${READMES}
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${INSTALL_DATA} ${WRKSRC}/Readmes/${readme} ${STAGEDIR}${LAGAN_DIR}/Readmes
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.endfor
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.include <bsd.port.mk>
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