mirror of
https://git.FreeBSD.org/ports.git
synced 2024-12-26 05:02:18 +00:00
137 lines
5.6 KiB
Plaintext
137 lines
5.6 KiB
Plaintext
bin/biofetch
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bin/bioflat
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bin/biogetseq
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@unexec if cmp -s %D/etc/bioinformatics/seqdatabase.ini %D/etc/bioinformatics/seqdatabase.ini.sample; then rm -f %D/etc/bioinformatics/seqdatabase.ini; fi
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etc/bioinformatics/seqdatabase.ini.sample
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@exec [ ! -f %B/etc/bioinformatics/seqdatabase.ini ] && cp %B/%f %B/etc/bioinformatics/seqdatabase.ini
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@dirrm etc/bioinformatics
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%%RUBY_SITELIBDIR%%/bio.rb
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%%RUBY_SITELIBDIR%%/bio/alignment.rb
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%%RUBY_SITELIBDIR%%/bio/appl/alignfactory.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/wublast.rb
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%%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb
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%%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb
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%%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/emboss.rb
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%%RUBY_SITELIBDIR%%/bio/appl/fasta.rb
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%%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb
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%%RUBY_SITELIBDIR%%/bio/appl/fasta/format6.rb
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%%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb
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%%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/mafft.rb
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%%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/psort.rb
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%%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/targetp/report.rb
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%%RUBY_SITELIBDIR%%/bio/appl/tmhmm/report.rb
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%%RUBY_SITELIBDIR%%/bio/data/aa.rb
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%%RUBY_SITELIBDIR%%/bio/data/codontable.rb
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%%RUBY_SITELIBDIR%%/bio/data/keggorg.rb
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%%RUBY_SITELIBDIR%%/bio/data/na.rb
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%%RUBY_SITELIBDIR%%/bio/db.rb
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%%RUBY_SITELIBDIR%%/bio/db/aaindex.rb
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%%RUBY_SITELIBDIR%%/bio/db/embl.rb
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%%RUBY_SITELIBDIR%%/bio/db/embl/embl.rb
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%%RUBY_SITELIBDIR%%/bio/db/embl/sptr.rb
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%%RUBY_SITELIBDIR%%/bio/db/embl/swissprot.rb
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%%RUBY_SITELIBDIR%%/bio/db/embl/trembl.rb
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%%RUBY_SITELIBDIR%%/bio/db/fantom.rb
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%%RUBY_SITELIBDIR%%/bio/db/fasta.rb
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%%RUBY_SITELIBDIR%%/bio/db/genbank.rb
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%%RUBY_SITELIBDIR%%/bio/db/genbank/ddbj.rb
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%%RUBY_SITELIBDIR%%/bio/db/genbank/genbank.rb
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%%RUBY_SITELIBDIR%%/bio/db/genbank/genpept.rb
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%%RUBY_SITELIBDIR%%/bio/db/genbank/refseq.rb
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%%RUBY_SITELIBDIR%%/bio/db/gff.rb
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%%RUBY_SITELIBDIR%%/bio/db/go.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/cell.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/ko.rb
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%%RUBY_SITELIBDIR%%/bio/db/kegg/microarray.rb
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%%RUBY_SITELIBDIR%%/bio/db/litdb.rb
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%%RUBY_SITELIBDIR%%/bio/db/medline.rb
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%%RUBY_SITELIBDIR%%/bio/db/nbrf.rb
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%%RUBY_SITELIBDIR%%/bio/db/pdb.rb
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%%RUBY_SITELIBDIR%%/bio/db/prosite.rb
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%%RUBY_SITELIBDIR%%/bio/db/transfac.rb
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%%RUBY_SITELIBDIR%%/bio/extend.rb
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%%RUBY_SITELIBDIR%%/bio/feature.rb
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%%RUBY_SITELIBDIR%%/bio/io/brdb.rb
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%%RUBY_SITELIBDIR%%/bio/io/das.rb
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%%RUBY_SITELIBDIR%%/bio/io/dbget.rb
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%%RUBY_SITELIBDIR%%/bio/io/ddbjxml.rb
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%%RUBY_SITELIBDIR%%/bio/io/fetch.rb
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%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
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%%RUBY_SITELIBDIR%%/bio/io/flatfile/bdb.rb
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%%RUBY_SITELIBDIR%%/bio/io/flatfile/index.rb
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%%RUBY_SITELIBDIR%%/bio/io/flatfile/indexer.rb
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%%RUBY_SITELIBDIR%%/bio/io/keggapi.rb
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%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
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%%RUBY_SITELIBDIR%%/bio/io/registry.rb
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%%RUBY_SITELIBDIR%%/bio/io/sql.rb
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%%RUBY_SITELIBDIR%%/bio/location.rb
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%%RUBY_SITELIBDIR%%/bio/pathway.rb
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%%RUBY_SITELIBDIR%%/bio/reference.rb
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%%RUBY_SITELIBDIR%%/bio/sequence.rb
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@dirrm %%RUBY_SITELIBDIR%%/bio/io/flatfile
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@dirrm %%RUBY_SITELIBDIR%%/bio/io
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@dirrm %%RUBY_SITELIBDIR%%/bio/db/kegg
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@dirrm %%RUBY_SITELIBDIR%%/bio/db/genbank
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@dirrm %%RUBY_SITELIBDIR%%/bio/db/embl
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@dirrm %%RUBY_SITELIBDIR%%/bio/db
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@dirrm %%RUBY_SITELIBDIR%%/bio/data
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/tmhmm
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/targetp
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/sosui
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/psort
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/mafft
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/hmmer
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/genscan
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/fasta
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/clustalw
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl/blast
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@dirrm %%RUBY_SITELIBDIR%%/bio/appl
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@dirrm %%RUBY_SITELIBDIR%%/bio
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/biofetch.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/dbget
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/fasta2tab.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/fsplit.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gb2fasta.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gb2tab.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gbtab2mysql.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genes2nuc.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genes2pep.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genes2tab.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genome2rb.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/genome2tab.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/goslim.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/gt2fasta.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/pmfetch.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/pmsearch.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/ssearch2tab.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/tdiary.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/tfastx2tab.rb
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%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/vs-genes.rb
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%%PORTDOCS%%@dirrm %%RUBY_MODEXAMPLESDIR%%
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ChangeLog
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/README
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/BioRuby.rd.ja
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Design.rd.ja
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/KEGG_API.rd.ja
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/TODO.rd.ja
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%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ja/Tutorial.rd.ja
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%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%/ja
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%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%%
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