Antoine Brodin 6a226290f3 biology/py-pybigwig: remove, duplicate of biology/py-bigwig		2021-10-13 18:57:58 +00:00
..
abyss
ad2vcf
artemis
avida
babel
bamtools
bamutil	biology/bamutil: Utilities for working with SAM/BAM files	2021-10-12 11:40:35 -05:00
bbmap
bcftools
bedtools
bfc
bioawk
biococoa
biolibc
biolibc-tools
bioparser
biosig
biosoup
biostar-tools	biology/biostar-tools: Add biology/bamutil to metaport deps	2021-10-12 11:43:08 -05:00
bolt-lmm
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks
cytoscape
ddocent
diamond	biology/diamond: Update to 2.0.12	2021-10-12 12:40:55 -03:00
dsr-pdb
edlib
emboss
erminej
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
flash
fluctuate
freebayes
garlic
gatk
gcta
gemma
generand
gff2ps
gmap
gperiodic
graphlan
groopm
haplohseq
hhsuite
hisat2
hmmer
htslib
hyphy	biology/hyphy: Enable on aarch64.	2021-10-08 18:27:33 +02:00
igv
infernal
iolib
iqtree
jalview
jellyfish	*: Clean up some things	2021-10-12 17:01:38 +02:00
kallisto
lamarc
libbigwig
libgtextutils
libneurosim	biology/libneurosim: New port: Common interfaces for neuronal simulators	2021-10-08 10:20:27 -07:00
libnuml
libsbml
libsedml
linux-foldingathome
mafft
mapm3
migrate
minimap2
mmseqs2
molden
mopac
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-entrez-direct
ncbi-toolkit
ncbi-vdb
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbseqan
peak-classifier
pear-merger
phrap
phred
phyml
picard-tools
plink
pooler	biology/pooler: fix build on powerpc	2021-10-06 20:52:30 +00:00
primer3
prodigal
prodigy-lig
protomol
psi88
py-bigwig
py-biom-format
py-biopython	biology/py-biopython: Update to 1.79	2021-10-12 14:43:04 +08:00
py-bx-python
py-crossmap
py-cutadapt
py-deeptoolsintervals	biology/py-deeptoolsintervals: Python interface for deepTools interval trees	2021-10-13 11:02:13 -05:00
py-dnaio
py-ete3
py-Genesis-PyAPI
py-gffutils
py-goatools
py-gtfparse
py-hits
py-libnuml
py-libsedml
py-loompy
py-macs2
py-multiqc
py-ont-fast5-api
py-orange3-bioinformatics
py-orange3-single-cell
py-pandas-charm
py-py2bit	biology/py-py2bit: Python interface for 2bit packed nucleotide files	2021-10-13 07:53:53 -05:00
py-pyfaidx
py-pysam
py-PySCeS
py-python-libsbml
py-pywgsim
py-resdk
py-scikit-bio
py-xenaPython
pyfasta
python-nexus
rainbow
rampler
readseq
recombine
ruby-bio
rubygem-bio
rubygem-bio-executables
rubygem-bio-old-biofetch-emulator
rubygem-bio-shell
sam2pairwise
samtools
scrm
seaview
seqan
seqan1
seqan3
seqan-apps	*/*: Remove compiler:openmp from Mk/Uses/compiler.mk	2021-10-03 19:47:27 +02:00
seqio
seqkit
seqtk
sigviewer
sim4
slclust
smithwaterman
snpeff
spoa
sra-tools
stacks
star
stringtie
subread
tabixpp
taxonkit
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ucsc-userapps
ugene
unikmer
vcf2hap
vcf-split
vcflib
vcftools
velvet
viennarna
vsearch
vt
wise
Makefile	biology/py-pybigwig: remove, duplicate of biology/py-bigwig	2021-10-13 18:57:58 +00:00