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freebsd-ports/science
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Martin Wilke 5e0dac513e - Update to 4.6.1 
PR:		177243
Submitted by:	ports fury
2013-03-24 16:27:23 +00:00
..
2d-rewriter
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2dhf
…
abinit
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afni
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
avogadro
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
bddsolve
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bft
Upgrade Code_Saturne to 2.0.
2012-07-07 15:15:56 +00:00
bodr
…
brian
- Update to 1.4.0
2012-09-04 07:13:08 +00:00
buddy
…
cdcl
Update to 5.4.7
2012-12-19 03:01:41 +00:00
cdf
…
cdo
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.
2013-03-19 13:04:30 +00:00
cgnslib
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
checkmol
- Update to 0.4d
2013-03-02 06:30:55 +00:00
chemical-mime-data
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chemtool
…
chemtool-devel
…
clhep
…
colt
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
crf++
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dcl
- Update to 5.4.7
2012-12-13 02:25:38 +00:00
devisor
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
dlpoly-classic
…
dtiquery
…
ecs
Chase french/med upgrade.
2013-03-19 20:35:32 +00:00
elmer-eio
…
elmer-hutiter
…
elmer-matc
…
elmer-meshgen2d
…
elmergrid
…
elmerpost
…
epte
- Update to 2.0.8
2012-08-06 07:19:41 +00:00
euler
…
fastcap
…
fasthenry
…
felt
- Update to version 3.07
2012-12-01 00:00:12 +00:00
flounder
- Fix build with clang
2012-12-23 19:11:12 +00:00
fvcom
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00
fvcom-mpi
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00
fvm
Chase french/med upgrade.
2013-03-19 20:35:32 +00:00
g3data
…
gamess
update to 2012/5/1 R2 version.
2013-03-05 11:43:18 +00:00
gchemutils
science/openbabel:
2012-12-11 14:19:54 +00:00
gdis
- Update to 0.90
2013-03-02 06:29:42 +00:00
getdp
- forgot to remove a file in the last update.
2012-11-08 00:02:06 +00:00
ghemical
Update to 3.0.0.
2013-01-08 10:50:11 +00:00
ghmm
…
gnudatalanguage
Add an explicit dependency on pkgconf
2013-03-22 12:36:06 +00:00
gramps
- Update *_DEPENDS on databases/py-bsddb after _bsddb.so relocation
2013-03-04 11:19:40 +00:00
gromacs
- Update to 4.6.1
2013-03-24 16:27:23 +00:00
gsmc
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gsystem
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
gtamsanalyzer
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gwyddion
- Update to 2.31
2013-03-02 14:47:05 +00:00
h5utils
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harminv
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hdf
- Update to 4.2.8.
2012-12-20 05:41:13 +00:00
hdf5
…
hdf5-18
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hdf-java
Convert to new option framework
2012-12-13 10:47:44 +00:00
hs-bio
- Fix breakage in the DYNAMIC-enabled ports triggered by the recent
2013-02-05 22:26:31 +00:00
InsightToolkit
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
isaac-cfd
…
jmol
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
jstrack
- update to 3.3.4 (old version isn't fetchable anymore)
2012-11-08 11:40:29 +00:00
kalzium
Mk/bsd.kde4.mk:
2013-03-22 14:18:02 +00:00
kmovisto
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
kst
- Deprecate QT3, KDE3 and unmaintained ports depending on them. QT 3.3.8
2012-12-30 12:03:51 +00:00
kst2
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
lamprop
…
libctl
Generalize the BROKEN message to remove i386 reference
2013-03-17 14:15:48 +00:00
libghemical
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.
2013-03-19 13:04:30 +00:00
libint
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libkml
Fix typos and make small modifications in COMMENT (according to Porter's
2012-08-03 15:54:35 +00:00
liblinear
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liboglappth
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.
2013-03-19 13:04:30 +00:00
libquantum
…
libsvm
…
libsvm-python
…
linsmith
- Fix build with clang
2013-02-07 14:36:55 +00:00
massxpert
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
mayavi
- Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation
2013-03-02 22:32:48 +00:00
mbdyn
add math/metis4 to math/Makefile; update math/metis to 5.0.2; add appropriate
2012-07-09 11:11:44 +00:00
mcstas
- Fix warning when building in a jail
2013-03-14 00:52:09 +00:00
medit
Upgrade to 2012.02.05.
2012-11-22 21:39:32 +00:00
meep
- Convert to Optionsng
2013-03-14 11:20:54 +00:00
mei
MEI stands for Mathematical Expression Interpreter.
2012-07-07 15:15:08 +00:00
minc
Update to version 1.5.1 [1]
2012-07-20 16:32:07 +00:00
minc2
Update to version 2.0.18 [1]
2012-07-20 16:33:32 +00:00
mol2ps
- Update to 0.3
2013-03-02 14:54:19 +00:00
mpb
…
mpqc
Fix recent build on tinderbox. Somehow "sc_PsiCCSD_T.3" is not
2013-01-08 04:49:03 +00:00
mpqc-mpich
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ncs
Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update.
2013-02-03 18:16:54 +00:00
netcdf
…
netcdf3-ftn
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netcdf4
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.
2013-03-19 13:04:30 +00:00
netcdf-ftn
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nifticlib
- Fix typos in COMMENT
2012-08-02 09:02:43 +00:00
omnetpp
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openbabel
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
ovt
Decommissioning java 1.5 (EOLed since October 2009):
2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight
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p5-Chemistry-3DBuilder
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
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p5-Chemistry-File-MDLMol
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB
…
p5-Chemistry-File-SLN
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
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p5-Chemistry-MacroMol
- Trim Makefile headers
2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol
- Trim Makefile headers
2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Geo-BUFR
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p5-Geo-Coordinates-Converter
Cleanup supporting perl version 5.8 and 5.10,
2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
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p5-Geo-ReadGRIB
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p5-Geo-WebService-Elevation-USGS
Update to 0.011.
2013-01-29 08:50:49 +00:00
p5-PerlMol
- Remove SITE_PERL from *_DEPENDS
2012-06-28 17:51:57 +00:00
p5-Physics-Unit
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paje
…
paraview
- convert USE_CMAKE to USES
2013-03-22 20:06:14 +00:00
peekabot
This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.
2013-03-19 13:04:30 +00:00
pnetcdf
- Update to 1.3.1
2012-09-30 04:19:04 +00:00
psi3
- Fix all cases of 'No newline at end of file' in ports tree
2013-02-01 15:04:00 +00:00
psychopy
- Update to 1.76.0
2013-03-24 14:19:01 +00:00
py-biolccc
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py-DendroPy
Update to 3.12.0
2012-07-18 06:21:15 +00:00
py-h5py
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py-hcluster
…
py-mdp
- Update to 3.2
2012-08-08 21:27:15 +00:00
py-mlpy
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py-netCDF4
- Update to 1.0.2
2012-11-27 03:28:28 +00:00
py-obspy-core
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.db
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.gse2
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.imaging
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.iris
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.mseed
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.signal
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.taup
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.wav
- Trim Makefile headers
2012-10-10 06:46:07 +00:00
py-obspy.xseed
- Update to 0.7.0
2012-10-10 06:25:58 +00:00
py-paida
- Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation
2013-03-02 22:32:48 +00:00
py-pydicom
Fix typos and make small modifications in COMMENT (according to Porter's
2012-08-03 15:54:35 +00:00
py-scikit-learn
Update to version 0.13.1.
2013-03-11 14:11:26 +00:00
py-scimath
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py-scipy
- update to 0.11.0
2012-10-17 06:15:16 +00:00
py-ws2300
- Update to 1.7 [1]
2012-12-09 13:19:39 +00:00
pybrain
…
pycdf
…
pynn
- Update to 0.7.5
2013-03-02 05:49:40 +00:00
qcl
…
qtresistors
…
R-cran-AMORE
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-bayesm
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-DCluster
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-e1071
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-eco
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-Epi
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-epicalc
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-snow
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
R-cran-som
update math/R to 2.15.3, and adjust dependent ports
2013-03-07 04:21:34 +00:00
ruby-dcl
- Update to 1.7.0.
2012-07-25 01:23:45 +00:00
ruby-gphys
- Update to 1.2.2
2013-01-22 03:31:11 +00:00
ruby-netcdf
…
rubygem-ai4r
- Add patch to fix build
2013-02-26 02:34:03 +00:00
silo
- Update to 4.9
2013-03-02 14:49:28 +00:00
simlib
…
step
Mk/bsd.kde4.mk:
2013-03-22 14:18:02 +00:00
svmlight
…
szip
…
udunits
…
v_sim
science/openbabel:
2012-12-11 14:19:54 +00:00
veusz
Bump PORTREVISON after devel/py-sip and devel/qscintilla2 update.
2013-02-03 18:16:54 +00:00
vmd
Fix minor nit: use the canconical FreeBSD.org form for email addresses.
2013-03-17 16:44:03 +00:00
x11iraf
…
xmakemol
Switch from libglut to freeglut and retire libglut. Libglut hasn't been
2012-08-04 22:52:02 +00:00
xmds
…
Makefile
Add new ports science/fvcom and science/fvcom-mpi:
2013-02-20 17:30:45 +00:00