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freebsd-ports/science
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Tobias C. Berner 896d87b6fb */*: Zpdate KDE Gear to 21.04.2 
Thursday, 10 June 2021

Over 120 individual programs plus dozens of programmer libraries and
feature plugins are released simultaneously as part of KDE Gear.

The full changelog can be found here:
	https://kde.org/announcements/changelogs/gear/21.04.2/
2021-06-13 08:06:29 +02:00
..
2d-rewriter
abinit science/abinit: Update 9.4.1 -> 9.4.2 2021-05-06 20:44:02 -07:00
afni science/afni: update to 21.1.09 2021-05-31 22:54:09 +02:00
agrum science/agrum: Update 0.20.2 -> 0.20.3 2021-06-11 17:19:55 -07:00
aircraft-datcom
ALPSCore
antioch
apbs
atompaw
avogadro2 science/avogadro2: Update 1.93.0 -> 1.94.0 2021-06-04 11:28:22 -07:00
avogadrolibs science/avogadrolibs: Remove redundant line 2021-06-04 11:15:39 -07:00
axom science/axom: Update 0.4.0 -> 0.5.0 2021-05-16 09:15:43 -07:00
bagel
bddsolve
berkeleygw
bodr
buddy
cdcl Deorbit RESTRICTED && NO_CDROM, part two. 2021-05-06 13:47:48 +02:00
cdf
cdk
cdo
cgnslib
cgribex science/cgribex: Simplify Makefile 2021-05-12 05:47:00 +08:00
checkmol
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono devel/flatbuffers: Update 1.12.0 -> 2.0.0 2021-05-11 12:49:07 -07:00
clhep
clipper
code_saturne math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
colt
conduit science/conduit: Update 0.7.1 -> 0.7.2 2021-05-19 23:02:27 -07:00
coordgenlibs science/coordgenlibs: Update 1.4.2 -> 2.0.3 2021-06-11 02:57:59 -07:00
cp2k
cp2k-data
crf++
dakota
dalton
dcl Deorbit RESTRICTED && NO_CDROM, part two. 2021-05-06 13:47:48 +02:00
devisor
dftbplus science/dftbplus: fix BROKEN message 2021-05-25 11:06:44 +00:00
dkh
dlib-cpp science/dlib-cpp: remove the patch that is now committed upstream and breaks the build on powerpc64le 2021-04-11 22:45:40 +00:00
drawxtl
dvc Unbreak ports after devel/py-gitpython's PORTNAME change 2021-04-29 13:53:44 -04:00
eccodes science/eccodes: Update to 2.22.0 2021-06-10 22:45:59 +08:00
elk
elmerfem Cleanup LIB_DEPENDS 2021-04-23 20:56:21 +00:00
epte
erd
ergo
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet
fisicalab science/fisicalab: mark BROKEN 2021-04-26 17:19:18 +03:00
frontistr science/frontistr adding FrontISTR 2021-04-26 12:17:38 +02:00
fsom
fvcom Deorbit RESTRICTED && NO_CDROM, part two. 2021-05-06 13:47:48 +02:00
fvcom-mpi
gabedit
gamess-us
gchemutils science/gchemutils: drop wrong dependency on gtkglext 2021-05-01 23:00:05 +02:00
gdma
getdp
ghemical
ghmm
gnudatalanguage math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
gpaw-setups
gramps */*: Fix ENOTIME: return my ports to the pool 2021-05-22 10:13:01 +08:00
grib_api
gromacs science/gromacs: Update 2021.1 -> 2021.2 2021-05-06 20:44:01 -07:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
hepmc3
highfive science/highfive: Update 2.2.2 -> 2.3 2021-05-07 01:59:45 -07:00
hypre science/hypre: Update 2.20.0 -> 2.21.0 2021-05-25 23:59:05 -07:00
iboview
InsightToolkit */*: Fix ENOTIME: return my ports to the pool 2021-05-22 10:13:01 +08:00
isaac-cfd
jdftx
jmol science/jmol: Update 14.31.40 -> 14.31.41 2021-06-02 01:49:44 -07:00
jstrack
kalzium */*: Zpdate KDE Gear to 21.04.2 2021-06-13 08:06:29 +02:00
kim-api
kst2 KDE_INVENT: drop WRKSRC hack 2021-05-07 14:33:22 +02:00
lammps science/lammps: Update 8Apr2021 -> 14May2021 2021-05-15 00:12:32 -07:00
lamprop
latte
libaec
libccp4
libcint science/libcint: Fix tests by adding the science/py-pyscf dependency 2021-06-05 13:26:34 -07:00
libctl
libecpint science/libecpint: 1.0.5 -> 1.0.6 2021-04-16 21:00:55 -07:00
libefp
libgeodecomp
libghemical
libgridxc science/libgridxc: Update 0.8.5 -> 0.9.6 2021-04-23 18:36:22 -07:00
libint
libint2
libkml devel/googletest: update to 1.11.0 2021-06-12 03:25:45 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus
madness
maeparser
massxpert
mbdyn math/suitesparse: adapt dependency lines after modularization 2021-05-25 12:00:10 +02:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript science/molscript: Update WWW because previous URL is dead 2021-04-17 02:22:10 -07:00
molsketch
mpb
mpqc
msms
multiwfn
namd
nest
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem
nwchem-data
octopus
openbabel science/coordgenlibs: Update 1.4.2 -> 2.0.3 2021-06-11 02:57:59 -07:00
openkim
openkim-models
opensim-core
opensph misc/openvdb: Update 8.0.1 -> 8.1.0 2021-06-12 20:48:20 -07:00
opsin
orthanc science/orthanc: Revive port 2021-06-08 14:15:17 -04:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol science/p5-Chemistry-Mol: Update to 0.38 2021-05-31 03:55:14 +08:00
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS science/p5-Geo-WebService-Elevation-USGS: Update to 0.119 2021-05-31 03:55:16 +08:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2
paje
pcmsolver
PETSc
plumed science/plumed: Update 2.7.0 -> 2.7.1 2021-04-16 21:00:57 -07:00
pnetcdf
pulseview
py-abipy
py-access
py-asdf Mk: switch PYTHON_REL to 5 digits to support python 3.10.x 2021-05-25 16:55:43 +03:00
py-ase math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-avogadrolibs science/py-avogadrolibs: Update 1.93.0 -> 1.94.0 2021-06-04 10:56:40 -07:00
py-cdo
py-chainer
py-chainer-chemistry
py-chempy math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-coards science/py-coards: Cosmetic change 2021-05-12 05:47:18 +08:00
py-DendroPy
py-dipy science/py-dipy: Update 1.4.0 -> 1.4.1 2021-05-06 10:59:23 -07:00
py-dlib science/py-dlib: fix build on powerpc64le 2021-04-11 17:08:35 +00:00
py-eccodes science/py-eccodes: Remove PYNUMPY 2021-06-10 22:46:16 +08:00
py-esda
py-geolinks
py-geomet
py-geometer science/py-geometer: Remove PYNUMPY 2021-04-18 13:44:04 +08:00
py-geometric
py-gpaw math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-GPy science/py-GPy: Update 1.9.9 -> 1.10.0 2021-05-22 01:33:34 -07:00
py-GPyOpt
py-gsd science/py-gsd: Update 2.4.1 -> 2.4.2A 2021-04-17 17:53:22 -07:00
py-h5json science/py-h5py: Update to 3.2.1 2021-04-18 13:44:04 +08:00
py-h5py Mk: switch PYTHON_REL to 5 digits to support python 3.10.x 2021-05-25 16:55:43 +03:00
py-inequality
py-jupyter_jsmol
py-kim-query
py-kinematics science/py-kinematics: Remove PYNUMPY 2021-04-18 13:44:05 +08:00
py-kliff science/py-kliff: Update 0.2.0 -> 0.2.2 2021-05-25 23:59:06 -07:00
py-liac-arff
py-libpysal
py-lifelines
py-MDAnalysis math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-MDAnalysisTests
py-mdp
py-mmtf-python
py-molmod
py-moltemplate science/py-moltemplate: Update 2.19.9 -> 2.19.10 2021-05-04 22:01:52 -07:00
py-netCDF4
py-netcdf-flattener
py-nibabel
py-nilearn science/py-nilearn: Update 0.7.0 -> 0.7.1 2021-04-17 17:57:38 -07:00
py-obspy math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-oddt
py-OpenFermion science/py-h5py: Update to 3.2.1 2021-04-18 13:44:04 +08:00
py-openpiv
py-paida
py-paramz
py-phono3py science/py-phono3py: Remove unnecessary build dependency on math/lapacke 2021-06-08 20:32:22 -07:00
py-phonopy science/py-phonopy: Update 2.9.3 -> 2.10.0 2021-06-11 02:57:58 -07:00
py-pupynere science/py-pupynere: Remove PYNUMPY 2021-04-18 13:44:05 +08:00
py-pyaixi
py-pycsw graphics/py-pyproj: Update to 3.1.0 2021-05-27 02:59:53 +08:00
py-pydicom
py-PyFR science/py-PyFR: Update 1.12.0 -> 1.12.1 2021-06-05 11:53:10 -07:00
py-pygeodesy science/py-pygeodesy: Update to 21.4.21 2021-05-12 05:47:18 +08:00
py-pygeometa
py-pygmo2
py-pymatgen science/py-pymatgen: Update 2022.0.7 -> 2022.0.8 2021-05-10 10:45:56 -07:00
py-pymol
py-pyosf
py-pysal
py-pyscf science/py-pyscf: New port: Python module for quantum chemistry 2021-06-05 13:01:38 -07:00
py-pyteomics science/py-pyteomics: Change RUN_DEPENDS from py-sqlalchemy13 to py-sqlalchemy14 2021-05-12 05:47:18 +08:00
py-qcelemental science/py-qcelemental: Update 0.19.0 -> 0.20.0 2021-05-17 09:16:55 -07:00
py-qcengine science/py-qcengine: Update 0.18.0 -> 0.19.0 2021-05-17 09:16:55 -07:00
py-qspin
py-quantities
py-rmf science/py-rmf: Update 1.2 -> 1.3 2021-04-22 01:05:45 -07:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn
py-scikit-optimize math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
py-scikit-sparse math/suitesparse: adapt dependency lines after modularization 2021-05-25 12:00:10 +02:00
py-scimath
py-scipy science/py-scipy: Fix required python version 2021-06-01 11:12:07 +08:00
py-scoria
py-segregation
py-segyio
py-SimpleSpectral
py-skrebate science/py-skrebate: Add py-skrebate 0.62 2021-04-26 04:35:07 +08:00
py-spaghetti
py-spglib
py-tensorflow devel/grpc: Update to 1.38.0 2021-05-26 20:54:17 +08:00
py-tobler
py-veusz
pybrain
pynn
qbox science/qbox: Update 1.73.1 -> 1.73.2 2021-05-05 22:49:41 -07:00
qcl
qiskit-aer
qmcpack science/qmcpack: Update 3.10.0 -> 3.11.0 2021-04-18 23:39:23 -07:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 science/R-cran-e1071: Update to 1.7-7 2021-05-26 13:01:42 +09:00
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA science/R-cran-fastICA: Update to 1.2-2 and take maintainership 2021-05-10 11:59:19 -04:00
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: Update 2020.09.5 -> 2021.03.3 2021-06-11 02:57:59 -07:00
rmf science/rmf: Update 1.2 -> 1.3 2021-04-22 01:05:44 -07:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo science/rubygem-rgeo: Update to 2.3.0 2021-04-26 04:36:21 +08:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4 science/rubygem-rgeo-proj4: Update to 3.0.1 2021-05-12 05:47:29 +08:00
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis science/scidavis: chase liborigin update 2021-05-12 18:26:59 +03:00
segyio
shelxle science/shelxle: Update 1.0.1264 -> 1.0.1267 2021-06-02 01:49:44 -07:00
siesta science/siesta: Broken on aarch64, powerpc* due to lack of IEEE754 support in gcc 2021-05-18 21:07:41 -07:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid
simint
simlib
simsmith
smoldyn science/smoldyn: Fix build - release was rerolled 2021-06-09 17:24:37 -07:00
sparta
spglib
step */*: Zpdate KDE Gear to 21.04.2 2021-06-13 08:06:29 +02:00
svmlight
szip
teem
tfel
tfel-edf
thermofun
tinker science/tinker: Update 8.8.3 -> 8.9.1 2021-05-13 16:42:00 -07:00
udunits
v_sim math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
vipster Clean up some things 2021-05-01 19:55:55 +02:00
vmd
voro++
votca
wannier90
wwplot math/py-matplotlib: chase minimum Python version in dependent ports 2021-05-10 22:13:20 +02:00
wxmacmolplt
xcfun science/xcfun: fix build on GCC-based systems 2021-06-07 06:38:43 -05:00
xcrysden science/xcrysden: use default ImageMagick (7) 2021-05-12 21:49:23 +02:00
xdrawchem
xtb
yoda
Makefile science/orthanc: Hook to the build 2021-06-08 14:20:55 -04:00