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freebsd-ports/biology
History
Mark Linimon 557dff9206 Major update from 0.7.2 to 1.4 by new maintainer. This is almost a complete 
rework of the port.

See the page http://news.open-bio.org/archives/cat_bioperl.html for the
changes between 1.2 and 1.4.  The older changes are in the CVS tree.

From the new maintainer:

	Note that this new port just handles the installation of bioperl and
	not of additional extra stuff (bioperl-gui, bioperl-corba-server,
	bioperl-corba-client). This is unlike the behaviour of the current
	port.

	The extra stuff, though still functional, had very little adoption
	among users, and does not appear to be currently supported/maintained.

PR:		ports/47303 (and subsequent)
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
2004-01-21 08:34:33 +00:00
..
act update ports/biology/act to latest release (v2) 2003-06-23 13:37:39 +00:00
artemis De-pkg-comment. 2003-02-21 11:08:38 +00:00
avida Move inclusion of bsd.port.pre.mk later in the file for conditional BROKEN 2003-06-04 22:43:38 +00:00
babel Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
biojava ports with possibly unreachable MAINTAINERs 2003-11-02 02:48:08 +00:00
chemeq * Fix build with GCC3 (-CURRENT). 2003-03-25 12:28:57 +00:00
clustalw - Add an end-of-string to each line of the input 2003-08-28 04:51:02 +00:00
coalesce Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
crimap Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
deft De-pkg-comment. 2003-02-21 11:08:38 +00:00
distribfold Update to 20030425 snapshot 2003-04-25 18:01:46 +00:00
dna-qc Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
emboss Define USE_PERL5_BUILD, not erroneous USE_PERL. 2003-11-20 15:06:14 +00:00
fasta Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
fasta3 unPERLify by using REINPLACE_CMD and SED where appropriate. 2003-11-15 20:13:21 +00:00
fastdnaml Pet portlint. 2003-11-03 21:01:28 +00:00
flip De-pkg-comment. 2003-02-21 11:08:38 +00:00
fluctuate Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
garlic silent updates of archives: 2003-12-28 08:02:14 +00:00
genpak o Main modification 2003-08-18 16:15:10 +00:00
gff2ps Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
gperiodic Update to 2.0.7. 2003-11-07 16:50:32 +00:00
grappa Mark as broken on 5.x due to the usual gcc terminating-character hassles. 2003-12-19 10:22:05 +00:00
hmmer Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
kinemage unPERLify by using REINPLACE_CMD and SED where appropriate. 2003-11-15 20:13:21 +00:00
L-Breeder - Unbreak on 5.x 2003-11-20 09:28:34 +00:00
lamarc Clear moonlight beckons. 2003-03-07 06:14:21 +00:00
libgenome - Update to 0.5.2 2003-10-20 22:41:04 +00:00
lsysexp Chased new mastersite per distfile survey. Notified maintainer. 2003-10-26 08:19:46 +00:00
migrate Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
molden Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
mopac Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
nab ${MASTER_SITES} are slow. This patch adds a mirror site to help 2003-11-06 11:32:30 +00:00
ncbi-toolkit Use the FIND and XARGS macros introduced in bsd.port.mk 1.391. 2003-11-13 14:45:08 +00:00
nclever s/NOPORTSDOCS/NOPORTDOCS/ [1] 2003-07-11 11:01:13 +00:00
ortep3 Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
p5-AcePerl utilize SITE_PERL 2003-10-24 12:05:09 +00:00
p5-bioperl Major update from 0.7.2 to 1.4 by new maintainer. This is almost a complete 2004-01-21 08:34:33 +00:00
paml Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
phylip Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
pkg
platon - Update to last snapshot 2003-12-07 00:29:56 +00:00
povchem Add semi-colons(;) after declare statements that go in the povray scene file 2003-07-14 06:50:15 +00:00
primer3 - Fix MASTER_SITES 2003-12-20 12:20:49 +00:00
psi88 Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
py-biopython Define USE_PERL5_BUILD, not erroneous USE_PERL. 2003-11-20 15:06:14 +00:00
pymol LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3. 2003-11-07 20:45:29 +00:00
rasmol De-pkg-comment. 2003-02-20 17:07:10 +00:00
recombine Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
ruby-bio Update to 0.5.3. 2003-10-14 22:25:59 +00:00
seaview - Update to new version 2003.11.17 2003-11-17 13:36:41 +00:00
seqio Respect CC and CFLAGS 2003-10-23 00:01:04 +00:00
sim4 ports with possibly unreachable MAINTAINERs 2003-11-02 02:48:08 +00:00
spdbv De-pkg-comment. 2003-02-21 11:08:38 +00:00
t_coffee Use the FIND and XARGS macros introduced in bsd.port.mk 1.391. 2003-11-13 14:45:08 +00:00
tinker - Update checksum again, seems author removes .ps version of documentation 2003-11-21 22:28:34 +00:00
treepuzzle De-pkg-comment. 2003-02-21 11:08:38 +00:00
treeviewx Switch to wxgtk2. 2003-11-14 12:37:26 +00:00
tRNAscan-SE Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
wise Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
xdrawchem Remove my e-mail address from comment blocks of ports 2003-11-13 10:11:35 +00:00
xmolwt Cosmetic fix: use %%DOCSDIR%% macro. 2003-10-22 09:37:18 +00:00
Makefile new port:biology/lsysexp 2003-09-03 02:23:23 +00:00